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Targeting a cluster of arginine residues of neuraminidase to avoid oseltamivir resistance in influenza A (H1N1): a theoretical study

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Abstract

Following the influenza A (H1N1) pandemic in Mexico and around the world in 2009, the numbers of oseltamivir-resistant clinical cases have increased through a mechanism that remains unclear. In this work, we focus on studying the mutated NA structures ADA71175 (GenBank) and 3CKZ (PDB ID). Recently crystallized NA (PDB ID: 3NSS) was used as a wild-type structure and template to construct the three-dimensional (3D) structure of ADA71175. Then, the NA mutants and 3NSS natives as well as their refined monomer structures as determined through MD simulations (snapshots at 50 ns) were used as models to perform a docking study using a set of aryl-oseltamivir derivatives. These aryl-oseltamivir derivatives have better recognition properties than oseltamivir because of cation–π interactions with a cluster of Arg residues (118, 292, and 371) at the binding site. This cluster of Arg residues represents a potential binding site for aryl-oseltamivir derivatives that are potentially new NA inhibitors.

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Acknowledgments

The work was supported by grants from ICyTDF (Instituto de Ciencia y Tecnología del Distrito Federal), CONACYT (Consejo Nacional de Ciencia y Tecnología), CYTED (Programa Iberoamericano de Ciencia y Tecnología para el Desarrollo) and BEIFI (BECA DE ESTÍMULO INSTITUCIONAL DE FORMACIÓN DE INVESTIGADORES), SIP (secretaria de investigación y posgrado), COFAA (COMISIÓN DE OPERACIÓN Y FOMENTO DE ACTIVIDADES ACADEMICAS) from IPN (Instituto Politécnico Nacional, México).

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Authors and Affiliations

  1. Laboratorio de Modelado Molecular y Diseño de Fármacos (Laboratory of Molecular Modeling and Drug Design), Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340, México City, Mexico

    L. Ramírez-Salinas Gema, L. E. Tolentino-Lopez & J. Correa-Basurto

  2. Laboratorio de Investigación, Departamento de Química Inorgánica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala, 11340, México, DF, Mexico

    L. E. Tolentino-Lopez & F. Martínez-Ramos

  3. Laboratorio de Investigación de Química Supramolecular, Unidad Profesional Interdisciplinaria de Biotecnología, Instituto Politécnico Nacional, Av. Acueducto s/n., Barrio La Laguna, col. Ticomán, C.P. 07340, México, DF, Mexico

    I. Padilla-Martínez

  4. Laboratorio de Medicina de Conservación, Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina, Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón, 11340, México, DF, Mexico

    J. García-Machorro

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  1. L. Ramírez-Salinas Gema
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Correspondence to J. Correa-Basurto.

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Gema, L.RS., Tolentino-Lopez, L.E., Martínez-Ramos, F. et al. Targeting a cluster of arginine residues of neuraminidase to avoid oseltamivir resistance in influenza A (H1N1): a theoretical study. J Mol Model 21, 8 (2015). https://doi.org/10.1007/s00894-014-2525-9

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  • DOI: https://doi.org/10.1007/s00894-014-2525-9

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