Abstract
A study using two classification methods (SDA and SIMCA) was carried out in this work with the aim of investigating the relationship between the structure of flavonoid compounds and their free-radical-scavenging ability. In this work, we report the use of chemometric methods (SDA and SIMCA) able to select the most relevant variables (steric, electronic, and topological) responsible for this ability. The results obtained with the SDA and SIMCA methods agree perfectly with our previous model, in which we used other chemometric methods (PCA, HCA and KNN) and are also corroborated with experimental results from the literature. This is a strong indication of how reliable the selection of variables is.
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Takabe W, Niki E, Uchida K, Yamada S, Satoh K, Noguchi N (2001) Carcinogenesis 22:935–941
Kawanishi S, Hiraku Y, Oikawa S (2001) Mutat Res 488:65–76
Khan MA, Baseer A (2001) J Pak Med Assoc 50:261–264
Sastre J, Pallardo FV, Vina J (2000) IUBMB Life 49:427–435
van Acker SABE, van den Berg DJ, Tromp MNJL, Griffioen DH, van Bennekom WP, van der Vijgh WJF, Bast A (1996) Free Radical Biol Med 20:331–342
Cao G, Sofic E, Prior RL (1997) Free Radical Biol Med 22:749–760
Lien EJ, Ren S, Bui HH, Wang R (1999) Free Radical Biol Med 26:285–294
Rice-Evans CA, Miller NJ, Paganga G (1996) Free Radical Biol Med 20:933–956
van Acker SABE, de Groot MJ, van den Berg, DJ, Tromp MNJL, den Kelder GDO, van der Vijgh WJF, Bast A (1996) Chem Res Toxicol 9:1305–1312
van Acker FAA, Hageman JA, Haenen GRMM, van der Vijgh WJF, Bast A, Menge WMPB (2000) J Med Chem 43:53752–3760
Heijnen CGM, Haenen GRMM, van Acker FAA, van der Vijgh WJF, Bast A (2001) Toxicol In Vitro 32:111–121
Weber KC, Honório KM, da Silva SL, Mercadante R, da Silva ABF (2005) Int J Quantum Chem 103:731–737
Beebe KR, Pell RJ, Seasholtz MB (1998) Chemometrics: a practical guide. Wiley: New York
Penga ZF, Strackb D, Baumertb A, Subramaniama R, Goha NK, Chiaa TF, Tana SN, Chiaa S (2003) Phytochem 62:219–228
Allinger NL, Yuh YH, Lin JH (1989) J Am Chem Soc 111:8551–8566
Ostlund NS (1995) ChemPlus: program for molecular visualization and simulation. University of Waterloo, Canada
Dewar MJS, Zoebisch EG, Healy EF, Stewart JJP (1985) J Am Chem Soc 107:3902–3909
Ampac 6.5: program for semi-empirical calculations (1997) Semichem Inc, Shawnee
Zhang HY (1998) J Am Oil Chem Soc 75:1705–1709
Zhang HY (2000) Quant Struct Act Relat 19:50–53
Todeschini R, Consonni V, Pavan M (2002) Dragon 2.1. Milan
Pirouette 3.11 (2002) Infometrix Inc, Woodinville
Minitab Statistical Software (2000) Minitab Inc, State College
Sharaf MA, Illman DL, Kowalski BR (1986) Chemometrics. Wiley, New York
Kurtz HA, Stewart JJP, Dieter KM (1990) J Comput Chem 11:82
Arora A, Nair MG, Strasburg GM (1998) Free Radical Biol Med 24:1355–1363
Burda S, Oleszek W (2001) J Agric Food Chem 49:2774–2779
Kerry N, Rice-Evans C (1999) J Neurochem 73:247–253
Dugas Jr. AJ, Castaneda-Acosta J, Bonin G, Price KL, Fischer NH, Winston GW (2000) J Nat Products 63:327–331
Sekher Pannala A, Chan TS, O'Brien PJ, Rice-Evans CA (2001) Biochem Biophys Res Commun 282:1161–1168
Brereton RG (1992) Multivariate pattern recognition in chemometrics, illustrated by case studies. Elsevier, Amsterdam
Ishige K, Schubert D, Sagara Y (2001) Free Radical Biol Med 30:433–446
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The authors acknowledge the financial support given by CAPES and FAPESP (Brazilian agencies).
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Weber, K.C., Honório, K.M., Bruni, A.T. et al. The use of classification methods for modeling the antioxidant activity of flavonoid compounds. J Mol Model 12, 915–920 (2006). https://doi.org/10.1007/s00894-005-0083-x
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DOI: https://doi.org/10.1007/s00894-005-0083-x