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Morphological analysis for two types of viral particles in vacuoles of SARS-CoV-2-infected cells

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Abstract

In this study, we analyzed the morphological structure of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in human cells. We identified the two types of viral particles present within the vacuoles of infected cells. Using transmission electron microscopy, we observed that SARS-CoV-2 particles exhibited both low- and high-electron-density structures, which was further confirmed through three-dimensional reconstruction using electron tomography. The budding of these particles was exclusively observed within these vacuoles. Intriguingly, viral particles with low-electron-density structures were confined to vacuoles, whereas those with high-electron-density structures were found in vacuoles and on the cell membrane surface of infected cells. Notably, high-electron-density particles found within vacuoles exhibited the same morphology as those outside the infected cells. This observation suggests that the two types of viral particles identified in this study had different maturation status. Our findings provide valuable insights into the molecular details of SARS-CoV-2 particles, contributing to our understanding of the virus.

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References

  1. van Dorp L, Acman M, Richard D, Shaw LP, Ford CE, Ormond L, Owen CJ, Pang J, Tan CCS, Boshier FAT, Ortiz AT, Balloux F (2020) Emergence of genomic diversity and recurrent mutations in SARS-CoV-2. Infect Genet Evol 83:104351

    Article  PubMed  PubMed Central  Google Scholar 

  2. Brahim Belhaouari D, Fontanini A, Baudoin JP, Haddad G, Bideau ML, Bou Khalil JY, Raoult D, Scola BL (2020) The strengths of scanning electron microscopy in deciphering SARS-CoV-2 infectious cycle. Front Microbiol 11:2014

    Article  PubMed  PubMed Central  Google Scholar 

  3. Park WB, Kwon NJ, Choi SJ, Kang CK, Choe PG, Kim JY, Yun J, Lee GW, Seong MW, Kim NJ, Seo JS, Oh MD (2020) Virus isolation from the first patient with SARS-CoV-2 in Korea. J Korean Med Sci 35:e84

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Pesaresi M, Pirani F, Tagliabracci A, Valsecchi M, Procopio AD, Busardò FP, Graciotti L (2020) SARS-CoV-2 identification in lungs, heart and kidney specimens by transmission and scanning electron microscopy. Eur Rev Med Pharmacol Sci 24:5186–5188

    CAS  PubMed  Google Scholar 

  5. Prasad S, Potdar V, Cherian S, Abraham P, Basu A (2020) Transmission electron microscopy imaging of SARS-CoV-2. Indian J Med Res 151:241–243

    Article  PubMed  PubMed Central  Google Scholar 

  6. Wu H, Fujioka Y, Sakaguchi S, Suzuki Y, Nakano T (2022) Three-dimensional reconstruction by electron tomography for the application to ultrastructural analysis of SARS-CoV-2 particles. Med Mol Morphol 55:60–67

    Article  CAS  PubMed  Google Scholar 

  7. Masters PS, Perlman S (2020) Coronaviridae. In: Knipe DM, Howley PM (eds) Fields virology, 6th edn. Lippincott Williams & Wilkins, pp 825–858

    Google Scholar 

  8. Suzuki Y, Hishiki T, Emi A, Sakaguchi S, Itamura R, Yamamoto R, Matsuzawa T, Shimotohno K, Mizokami M, Nakano T, Yamamoto N (2021) Strong alkaline electrolyzed water efficiently inactivates SARS-CoV-2, other viruses, and gram-negative bacteria. Biochem Biophys Res Commun 575:36–41

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Pinto AL, Rai RK, Brown JC, Griffin P, Edgar JR, Shah A, Singanayagam A, Hogg C, Barclay WS, Futter CE, Burgoyne T (2022) Ultrastructural insight into SARS-CoV-2 entry and budding in human airway epithelium. Nat Commun 13:1609

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  10. Garoff H, Hewson R, Opstelten DJ (1998) Virus maturation by budding. Microbiol Mol Biol Rev 62:1171–1190

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Xian Y, Zhang J, Bian Z, Zhou H, Zhang Z, Lin Z, Xu H (2020) Bioactive natural compounds against human coronaviruses: a review and perspective. Acta Pharm Sin B 7:1163–1174

    Article  Google Scholar 

  12. Caldas LA, Carneiro FA, Higa LM, Monteiro FL, da Silva GP, da Costa LJ, Durigon EL, Tanuri A, de Souza W (2020) Ultrastructural analysis of SARS-CoV-2 interactions with the host cell via high resolution scanning electron microscopy. Sci Rep 10:16099

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  13. Barreto-Vieira DF, da Silva MAN, Garcia CC, Miranda MD, Matos ADR, Caetano BC, Resende PC, Motta FC, Siqueira MM, Girard-Dias W, Archanjo BS, Barth OM (2021) Morphology and morphogenesis of SARS-CoV-2 in Vero-E6 cells. Mem Inst Oswaldo Cruz 116:e200443

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Wolff G, Limpens RWAL, Zevenhoven-Dobbe JC, Laugks U, Zheng S, de Jong AWM, Koning RI, Agard DA, Grünewald K, Koster AJ, Snijder EJ, Bárcena M (2020) A molecular pore spans the double membrane of the coronavirus replication organelle. Science 369:1395–1398

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  15. Otegui MS, Pennington JG (2019) Electron tomography in plant cell biology. Microscopy (Oxf) 68:69–79

    Article  CAS  PubMed  Google Scholar 

  16. Mandala VS, McKay MJ, Shcherbakov AA, Dregni AJ, Kolocouris A, Hong M (2020) Structure and drug binding of the SARS-CoV-2 envelope protein transmembrane domain in lipid bilayers. Nat Struct Mol Biol 12:1202–1208

    Article  Google Scholar 

  17. Matsuyama S, Nao N, Shirato K, Kawase M, Saito S, Takayama I, Nagata N, Sekizuka T, Katoh H, Kato F, Sakata M, Tahara M, Kutsuna S, Ohmagari N, Kuroda M, Suzuki T, Kageyama T, Takeda M (2020) Enhanced isolation of SARS-CoV-2 by TMPRSS2-expressing cells. Proc Natl Acad Sci U S A 117:7001–7003

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  18. Klein S, Cortese M, Winter SL, Wachsmuth-Melm M, Neufeldt CJ, Cerikan B, Stanifer ML, Boulant S, Bartenschlager R, Chlanda P (2020) SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography. Nat Commun 11:5885

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  19. Sano E, Deguchi S, Sakamoto A, Mimura N, Hirabayashi A, Muramoto Y, Noda T, Yamamoto T, Takayama K (2021) Modeling SARS-CoV-2 infection and its individual differences with ACE2-expressing human iPS cells. iScience 24:102428

    Article  ADS  CAS  PubMed  PubMed Central  Google Scholar 

  20. Prydz K, Saraste J (2022) The life cycle and enigmatic egress of coronaviruses. Mol Microbiol 117:1308–1316

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Yao H, Song Y, Chen Y, Wu N, Xu J, Sun C, Zhang J, Weng T, Zhang Z, Wu Z, Cheng L, Shi D, Lu X, Lei J, Crispin M, Shi Y, Li L, Li S (2020) Molecular architecture of the SARS-CoV-2 virus. Cell 183:730–738

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Eymieux S, Rouillé Y, Terrier O, Seron K, Blanchard E, Rosa-Calatrava M, Dubuisson J, Belouzard S, Roingeard P (2021) Ultrastructural modifications induced by SARS-CoV-2 in Vero cells: a kinetic analysis of viral factory formation, viral particle morphogenesis and virion release. Cell Mol Life Sci 78:3565–3576

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Yan W, Zheng Y, Zeng X, He B, Cheng W (2022) Structural biology of SARS-CoV-2: open the door for novel therapies. Signal Transduct Target Ther 27:26

    Article  Google Scholar 

  24. Bonanad C, García-Blas S, Tarazona-Santabalbina F, Sanchis J, Bertomeu-González V, Fácila L, Ariza A, Núñez J, Cordero A (2020) The effect of age on mortality in patients with COVID-19: a meta-analysis with 611,583 subjects. J Am Med Dir Assoc 21:915–918

    Article  PubMed  PubMed Central  Google Scholar 

  25. Zhang C, Wang H, Wen Z, Bao Z, Li X (2023) Collective and Individual assessment of the risk of death from COVID-19 for the elderly, 2020–2022. China CDC Wkly 5:407–412

    Article  PubMed  PubMed Central  Google Scholar 

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Acknowledgements

We thank Ms. Akiko Wakui of the Hitachi High-Tech Corporation for her technical help in electron tomography. We thank Mr. Taka-aki Ishizuka of the Center for Medical Research & Development, Osaka Medical and Pharmaceutical University, we also thank Ms. Keiko Ootani of the Department of Microbiology and Infection Control, Osaka Medical and Pharmaceutical University for her help in the preparation of the manuscript.

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Correspondence to Hong Wu.

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Wu, H., Fujioka, Y., Sakaguchi, S. et al. Morphological analysis for two types of viral particles in vacuoles of SARS-CoV-2-infected cells. Med Mol Morphol (2024). https://doi.org/10.1007/s00795-024-00381-4

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