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Molybdenum and tungsten-dependent formate dehydrogenases

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Abstract

The prokaryotic formate metabolism is considerably diversified. Prokaryotes use formate in the C1 metabolism, but also evolved to exploit the low reduction potential of formate to derive energy, by coupling its oxidation to the reduction of numerous electron acceptors. To fulfil these varied physiological roles, different types of formate dehydrogenase (FDH) enzymes have evolved to catalyse the reversible 2-electron oxidation of formate to carbon dioxide. This review will highlight our present knowledge about the diverse physiological roles of FDH in prokaryotes, their modular structural organisation and active site structures and the mechanistic strategies followed to accomplish the formate oxidation. In addition, the ability of FDH to catalyse the reverse reaction of carbon dioxide reduction, a potentially relevant reaction for carbon dioxide sequestration, will also be addressed.

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Notes

  1. The Oligotropha carboxidovorans CO dehydrogenase with its unique binuclear copper–molybdenum cofactor is, however, presently classified under the xanthine oxidase family of mononuclear molybdoenzymes.

  2. Respiratory nitrate reductases are membrane-bound cytoplasm-faced molybdoenzymes and, as the name indicates, are used by the organisms to generate a proton motive force across the cytoplasmatic membrane [135–137]. They are also called NarGHI, because they are the product of the narG, H, and I genes. These enzymes, belonging to the DMSOR family, are heterotrimers, comprising: (i) a cytoplasmatic nitrate-reducing NarG subunit (≈125 kDa) that holds one molybdenum centre and one [4Fe–4S] centre; the molybdenum atom is coordinated by four sulfur atoms (from the two pyranopterin cofactor molecules) and two oxygen atoms (both from an aspartate residue or one from a terminal oxo group plus another one from an aspartate residue [136]); (ii) an electron-transfer NarH subunit (≈60 kDa) that holds one [3Fe–4S] and three [4Fe–4S] centres; and (iii) a membrane-bound quinol-oxidising NarI subunit (≈22 kDa) that holds two b-type haems.

Abbreviations

DMSOR:

Dimethylsulfoxide reductase

EPR:

Electron paramagnetic resonance spectroscopy

FDH:

Formate dehydrogenase

FDH-H:

E. coli formate dehydrogenase H, from the formate-hydrogen lyase system

FDH-N:

E. coli formate dehydrogenase N, from the anaerobic nitrate–formate respiratory pathway

FDH-O:

E. coli formate dehydrogenase O, from the aerobic respiratory pathways

Fe/S:

Iron–sulfur centre

Mo-FDH:

Molybdenum-dependent formate dehydrogenase

Mo/W-FDH:

Formate dehydrogenase that incorporates either molybdenum or tungsten

Mo/NAD-FDH:

Molybdenum-dependent/NAD-dependent formate dehydrogenase

Mo/W-bis PGD:

Molybdenum/tungsten-bis pyranopterin guanosine dinucleotide-containing enzymes

NAD-FDH:

NAD-dependent formate dehydrogenase

NarGHI:

Respiratory nitrate reductase, after the name of the encoding genes, narG, H, and I

PGD:

Pyranopterin guanosine dinucleotide cofactor

W/NAD-FDH:

Tungsten-dependent/NAD-dependent formate dehydrogenase

W-FDH:

Tungsten-dependent formate dehydrogenase

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Acknowledgments

This work was supported by Grants and Project PEst-C/EQB/LA0006/2013 from Fundação para a Ciência e Tecnologia (FCT)/MEC, Portugal.

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  1. UCIBIO@REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal

    Luisa B. Maia, José J. G. Moura & Isabel Moura

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  1. Luisa B. Maia
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  2. José J. G. Moura
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  3. Isabel Moura
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Correspondence to Isabel Moura.

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Responsible Editors: José Moura and Paul Bernhardt.

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Maia, L.B., Moura, J.J.G. & Moura, I. Molybdenum and tungsten-dependent formate dehydrogenases. J Biol Inorg Chem 20, 287–309 (2015). https://doi.org/10.1007/s00775-014-1218-2

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