Abstract
Evaluating the reactivity of the metal–thiolate clusters in metallothionein (MT) is a key step in understanding the biological functions of this protein. The effects of the metal clustering and protein environment on the thiolate reactivity with hydrogen peroxide (H2O2) were investigated by performing quantum theory calculations with chemical accuracy at two levels of complexity. At the first level, the reactivity with H2O2 of a model system ([(Zn)3(MeS)9]3−, MeS is methanethiolate) of the β domain cluster of MT was evaluated using density functional theory (DFT) with the mPW1PW91 functional. At the second level of complexity, the protein environment was included in the reactant system and the calculations were performed with the hybrid ONIOM method combining the DFT–mPW1PW91 and the semiempirical PM6 levels of theory. In these conditions, the energy barrier for the oxidation of the most reactive terminal thiolate was 21.5 kcal mol−1. This is 3 kcal mol−1 higher than that calculated for the terminal thiolate in the model system [(Zn)3(MeS)9]3− and about 7 kcal mol−1 higher than that obtained for the free thiolate. In spite of this rise of the energy barrier induced by the protein environment, the thiolate oxidation by H2O2 is confirmed as a possible way for metal release from MT. On the other hand, the results suggest that the antioxidant role of MT in the living cell cannot be as important as that of glutathione (which bears a free thiol).
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Krężl A, Hao Q, Maret W (2007) Arch. Biochem. Biophys. 463:188–200
Kang YJ (2006) Exp. Biol. Med. 231:1459–1467
Coyle P, Philcox JC, Carey LC, Rofe AM (2002) Cell. Mol. Life Sci. 59:627–647
Robbins AH, McRee DE, Williamson M, Collett SA, Xuong NH, Furey WF, Wang BC, Stout CD (1991) J. Mol. Biol. 221:1269–1293
Maret W, Valee BL (1998) Proc. Natl. Acad. Sci. U.S.A. 95:3478–3482
Zhu J, Meeusen J, Krezoski S, Petering DH (2010) Chem. Res. Toxicol. 23:422–431
Hu HY, Cheng HQ, Li Q, Zou YS, Xu GJ (1999) J. Prot. Chem. 18:665–670
Palmiter RD (1998) Proc. Natl. Acad. Sci. U.S.A. 95:8428–8430
Carpenè E, Andreani G, Isani G.: J. Trace Elem. Med. Biol. 21(Suppl 1):35–39 (2007)
Maret W (2004) Biochemistry 43:3301–3309
Maret W (1994) Proc. Natl. Acad. Sci. U.S.A. 91:237–241
You HJ, Lee KJ, Jeong HG (2002) FEBS Lett. 521:175–179
Quesada AR, Byrnes RW, Krezoski SO, Petering DH (1996) Arch. Biochem. Biophys. 334:241–250
Suntres ZE, Lui EMK (2006) Chem. Biol. Interact. 162:11–23
Jiménez I, Gotteland M, Zarzuelo A, Uauy R, Speisky H (1997) Toxicology 120:37–46
Kassim R, Ramseyer C, Enescu M (2011) Inorg. Chem. 50:5407–5416
Adamo C, Barone V (1998) J. Comput. Chem. 19:418–429
Warshel A, Levitt M (1976) J. Mol. Biol. 103:227–249
Lin H, Truhlar DG (2007) Theor. Chem. Acc. 117:185–199
Zhang Y, Liu H, Yang W (2000) J. Chem. Phys. 112:3483–3492
Kaukonen M, Söderhjelm P, Heimdal J, Ryde U (2008) J. Chem. Theory Comput. 4:985–1001
Hu H, Lu Z, Yang W (2007) J. Chem. Theory Comput. 3:390–406
Svensson M, Humbel S, Morokuma K (1996) J. Chem. Phys. 105:3654–3661
Yao L, Cukier RI, Yan H (2007) J. Phys. Chem. B. 111:4200–4210
Wang J, Sklenak S, Liu A, Felczak K, Wu Y, Li Y, Yan H (2012) Biochemistry 51:475–486
Yang W, Drueckhammer DG (2003) J. Phys. Chem. B. 107:5986–5994
Slater EA, Wierzbicki A (2007) J. Phys. Chem. B. 111:4547–4552
Pelmenschikow V, Siegbahn PE (2002) Inorg. Chem. 41:5659–5666
Chan J, Huang Z, Merrifield ME, Salgado MT, Stillman MJ (2002) Coord. Chem. Rev. 233–234:319–339
Stewart JJP (2007) J. Mol. Model. 13:1173–1213
Cossi M, Scalmani G, Rega N, Barone V (2002) J. Chem. Phys. 117:43–54
Schlegel HB, Iyengar SS, Li X, Millam JM, Voth GA, Scuseria GE, Frisch MJ (2002) J. Chem. Phys. 117:8694–8704
Dapprich S, Komáromi I, Byun KS, Morokuma K, Frisch MJ (1999) J. Mol. Struct. (Theochem) 462:1–21
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Scalmani, G., Barone, V., Mennucci, B., Petersson, G.A., Nakatsuji, H., Caricato, M., Li, X., Hratchian, H.P., Izmaylov, A.F., Bloino, J., Zheng, G., Sonnenberg, J.L., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Vreven, T., Montgomery, J.A. Jr., Peralta, J.E., Ogliaro, F., Bearpark, M., Heyd, J.J., Brothers, E., Kudin, K.N., Staroverov, V.N., Kobayashi, R., Normand, J., Raghavachari, K., Rendell, A., Burant, J.C., Iyengar, S.S., Tomasi, J., Cossi, M., Rega, N., Millam, N.J., Klene, M., Knox, J.E., Cross, J.B., Bakken, V., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R.E., Yazyev, O., Austin, A.J., Cammi, R., Pomelli, C., Ochterski, J.W., Martin, R.L., Morokuma, K., Zakrzewski, V.G., Voth, G.A., Salvador, P., Dannenberg, J.J., Dapprich, S., Daniels, A.D., Farkas, Ö., Foresman, J.B., Ortiz, J.V., Cioslowski, J., Fox, D.J. (2009) Gaussian 09, revision A.1. Gaussian, Wallingford
Stevens WJ, Krauss M, Basch H, Jasien PG (1992) Can. J. Chem. 70:612–630
Cardey B, Enescu M (2005) Chem. Phys. Chem 6:1175–1180
Gonzales C, Schlegel HB (1990) J. Phys. Chem. 94:5523–5527
Cardey B, Enescu M (2007) J. Phys. Chem. A 111:673–678
Sato M, Bremner I (1993) Free Radic. Biol. Med. 14:325–337
Braun W, Schultze P, Woergoetter E, Wagner G, Vasak M, Kaegi JHR, Wuthrich K (1988) J. Mol. Biol. 203:251–268
Winterbourn C, Metodiewa D (1999) Free Radic Biol. Med. 27:322–328
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Calculations were conducted largely with the supercomputer facility at the Mésocentre, a regional computational center at the University of Franche-Comté.
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Kassim, R., Ramseyer, C. & Enescu, M. Oxidation reactivity of zinc–cysteine clusters in metallothionein. J Biol Inorg Chem 18, 333–342 (2013). https://doi.org/10.1007/s00775-013-0977-5
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DOI: https://doi.org/10.1007/s00775-013-0977-5