Abstract
The OsFBT4 belongs to a small sub-class of rice F-box proteins called TLPs (Tubby-like proteins) containing the conserved N-terminal F-box domain and a C-terminal Tubby domain. These proteins have largely been implicated in both abiotic and biotic stress responses, besides developmental roles in plants. Here, we investigated the role of OsFBT4 in abiotic stress signalling. The OsFBT4 transcript was strongly upregulated in response to different abiotic stresses in rice, including exogenous ABA. When ectopically expressed, in Arabidopsis, under a constitutive CaMV 35S promoter, the overexpression (OE) caused hypersensitivity to most abiotic stresses, including ABA, during seed germination and early seedling growth. At the 5-day-old seedling growth stage, the OE conferred tolerance to all abiotic stresses. The OE lines displayed significant tolerance to salinity and water deficit at the mature growth stage. The stomatal size and density were seen to be altered in the OE lines, accompanied by hypersensitivity to ABA and hydrogen peroxide (H2O2) and a reduced water loss rate. Overexpression of OsFBT4 caused upregulation of several ABA-regulated/independent stress-responsive genes at more advanced stages of growth, showing wide and intricate roles played by OsFBT4 in stress signalling. The OsFBT4 showed interaction with several OSKs (Oryza SKP1 proteins) and localized to the plasma membrane (PM). The protein translocates to the nucleus, in response to oxidative and osmotic stresses, but failed to show transactivation activity in the yeast system. The OE lines also displayed morphological deviations from the wild-type (WT) plants, suggesting a role of the gene also in plant development.
Similar content being viewed by others
Data Availability
The datasets generated during and/or analysed during the current study are available from the corresponding author on reasonable request.
References
Aubert Y, Vile D, Pervent M et al (2010) RD20, a stress-inducible caleosin, participates in stomatal control, transpiration and drought tolerance in Arabidopsis thaliana. Plant Cell Physiol 51:1975–1987. https://doi.org/10.1093/pcp/pcq155
Bano N, Fakhrah S, Mohanty CS, Bag SK (2021) Genome-wide identification and evolutionary analysis of gossypium Tubby-like protein (TLP) gene family and expression analyses during salt and drought stress. Front Plant Sci 12:1–24. https://doi.org/10.3389/fpls.2021.667929
Bao Y, Song WM, Jin YL et al (2014) Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. Plant Mol Biol 86:471–483. https://doi.org/10.1007/s11103-014-0241-6
Bao Y, Song WM, Pan J et al (2016) Overexpression of the NDR1/HIN1-like gene NHL6 modifies seed germination in response to abscisic acid and abiotic stresses in Arabidopsis. PLoS ONE 11:1–16. https://doi.org/10.1371/journal.pone.0148572
Bates LS, Waldren RP, Teare ID (1973) Rapid determination of free proline for water-stress studies. Plant Soil 39:205–207. https://doi.org/10.1007/BF00018060
Boggon TJ, Shan WS, Santagata S et al (1999) Implication of tubby proteins as transcription factors by structure- based functional analysis. Science 286:2119–2125. https://doi.org/10.1126/science.286.5447.2119
Cai M, Qiu D, Yuan T et al (2008) Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance. Plant Cell Environ 31:86–96. https://doi.org/10.1111/j.1365-3040.2007.01739.x
Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735–743. https://doi.org/10.1046/j.1365-313X.1998.00343.x
Dong MY, Fan XW, Pang XY, Li YZ (2019) Decrypting tubby-like protein gene family of multiple functions in starch root crop cassava. AoB Plants 11:1–13. https://doi.org/10.1093/aobpla/plz075
Du F, Xu JN, Zhan CY et al (2014) An obesity-like gene MdTLP7 from apple (Malus × domestica) enhances abiotic stress tolerance. Biochem Biophys Res Commun 445:394–397. https://doi.org/10.1016/j.bbrc.2014.02.005
Du YY, Wang PC, Chen J, Song CP (2008) Comprehensive functional analysis of the catalase gene family in Arabidopsis thaliana. J Integr Plant Biol 50:1318–1326. https://doi.org/10.1111/j.1744-7909.2008.00741.x
Eisele JF, Fäßler F, Bürgel PF, Chaban C (2016) A rapid and simple method for microscopy-based stomata analyses. PLoS ONE 11:1–13. https://doi.org/10.1371/journal.pone.0164576
Fujita M, Fujita Y, Maruyama K et al (2004) A dehydration-induced NAC protein, RD26, is involved in a novel ABA-dependent stress-signaling pathway. Plant J 39:863–876. https://doi.org/10.1111/j.1365-313X.2004.02171.x
Gonzalez-Guzman M, Pizzio GA, Antoni R et al (2012) Arabidopsis PYR/PYL/RCAR receptors play a major role in quantitative regulation of stomatal aperture and transcriptional response to abscisic acid. Plant Cell 24:2483–2496. https://doi.org/10.1105/tpc.112.098574
Guo XY, Wang Y, Zhao PX et al (2019) AtEDT1/HDG11 regulates stomatal density and water-use efficiency via ERECTA and E2Fa. New Phytol 223:1478–1488. https://doi.org/10.1111/nph.15861
Harshavardhan VT, Van Son L, Seiler C et al (2014) AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance. PLoS ONE 9:1–14. https://doi.org/10.1371/journal.pone.0110065
He F, Wang HL, Li HG et al (2018) PeCHYR1, a ubiquitin E3 ligase from Populus euphratica, enhances drought tolerance via ABA-induced stomatal closure by ROS production in Populus. Plant Biotechnol J 16:1514–1528. https://doi.org/10.1111/pbi.12893
Heath RL, Packer L (1968) Photoperoxidation in isolated chloroplasts. I. Kinetics and stoichiometry of fatty acid peroxidation. Arch Biochem Biophys 125:189–198. https://doi.org/10.1016/0003-9861(68)90654-1
Heikenwälder MF, Koritschoner NP, Pajer P et al (2001) Molecular cloning, expression and regulation of the avian tubby-like protein 1 (tulp1) gene. Gene 273:131–139. https://doi.org/10.1016/S0378-1119(01)00578-9
Hwang K, Susila H, Nasim Z et al (2019) Arabidopsis ABF3 and ABF4 transcription factors act with the NF-YC complex to regulate SOC1 expression and mediate drought-accelerated flowering. Mol Plant 12:489–505. https://doi.org/10.1016/j.molp.2019.01.002
Jain M, Nijhawan A, Arora R et al (2007) F-Box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 143:1467–1483. https://doi.org/10.1104/pp.106.091900
Janiak A, Kwaśniewski M, Szarejko I (2016) Gene expression regulation in roots under drought. J Exp Bot 67:1003–1014. https://doi.org/10.1093/jxb/erv512
Jensen MK, Lindemose S, de Masi F et al (2013) ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio 3:321–327. https://doi.org/10.1016/j.fob.2013.07.006
Kahloul S, Hajsalah El Beji I, Boulaflous A et al (2013) Structural, expression and interaction analysis of rice SKP1-like genes. DNA Res 20:67–78. https://doi.org/10.1093/dnares/dss034
Kamranfar I, Balazadeh S, Mueller-Roeber B (2021) NAC transcription factor RD26 is a regulator of root hair morphogenic plasticity. bioRxiv. https://doi.org/10.1101/2021.04.21.440803
Kim JS, Mizoi J, Yoshida T et al (2011) An ABRE promoter sequence is involved in osmotic stress-responsive expression of the DREB2A gene, which encodes a transcription factor regulating drought-inducible genes in Arabidopsis. Plant Cell Physiol 52:2136–2146. https://doi.org/10.1093/pcp/pcr143
Ko JH, Yang SH, Han KH (2006) Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. Plant J 47:343–355. https://doi.org/10.1111/j.1365-313X.2006.02782.x
Kou Y, Qiu D, Wang L et al (2009) Molecular analyses of the rice tubby-like protein gene family and their response to bacterial infection. Plant Cell Rep 28:113–121. https://doi.org/10.1007/s00299-008-0620-z
Kumar D, Yusuf MA, Singh P, Sardar M, Sarin NB (2014) Histochemical detection of superoxide and H2O2 accumulation in Brassica juncea. Bio-protocol 4:1–4. https://doi.org/10.21769/BioProtoc.1108
Kuroda H, Yanagawa Y, Takahashi N et al (2012) A comprehensive analysis of interaction and localization of Arabidopsis SKP1-LIKE (ASK) and F-Box (FBX) proteins. PLoS One 7. https://doi.org/10.1371/journal.pone.0050009
Lai CP, Lee CL, Chen PH et al (2004) Molecular analyses of the Arabidopsis Tubby-like protein gene family. Plant Physiol 134:1586–1597. https://doi.org/10.1104/pp.103.037820
Lai CP, Shaw JF (2012) Interaction analyses of Arabidopsis tubby-like proteins with ASK proteins. Bot Stud 53:447–458
Lång V, Palva ET (1992) The expression of a RAB-related gene, RAB18, is induced by abscisic acid during the cold acclimation process of Arabidopsis thaliana (L.) Heynh. Plant Mol Biol 20:951–962. https://doi.org/10.1007/BF00027165
Li J, Li Y, Yin Z et al (2017) OsASR5 enhances drought tolerance through a stomatal closure pathway associated with ABA and H2O2 signalling in rice. Plant Biotechnol J 15:183–196. https://doi.org/10.1111/pbi.12601
Li S, Wang Z, Wang F et al (2021) A tubby-like protein CsTLP8 acts in the ABA signaling pathway and negatively regulates osmotic stresses tolerance during seed germination. BMC Plant Biol 21:1–14. https://doi.org/10.1186/s12870-021-03126-y
Li S, Zhang J, Liu L et al (2020) SlTLFP8 reduces water loss to improve water-use efficiency by modulating cell size and stomatal density via endoreduplication. Plant Cell Environ 43:2666–2679. https://doi.org/10.1111/pce.13867
Lin KH, Sei SC, Su YH, Chiang CM (2019) Overexpression of the Arabidopsis and winter squash superoxide dismutase genes enhances chilling tolerance via ABA-sensitive transcriptional regulation in transgenic Arabidopsis. Plant Signal Behav 14:1–12. https://doi.org/10.1080/15592324.2019.1685728
Liu Q (2008) Identification of rice Tubby-like genes and their evolution. FEBS J 275:163–171. https://doi.org/10.1111/j.1742-4658.2007.06186.x
Msanne J, Lin J, Stone JM, Awada T (2011) Characterization of abiotic stress-responsive Arabidopsis thaliana RD29A and RD29B genes and evaluation of transgenes. Planta 234:97–107. https://doi.org/10.1007/s00425-011-1387-y
Mukhopadhyay S, Jackson PK (2011) The tubby family proteins. Genome Biol 12:1–9. https://doi.org/10.1186/gb-2011-12-6-225
Nishimura N, Kitahata N, Seki M et al (2005) Analysis of ABA Hypersensitive Germination2 revealed the pivotal functions of PARN in stress response in Arabidopsis. Plant J 44:972–984. https://doi.org/10.1111/j.1365-313X.2005.02589.x
Nishimura N, Yoshida T, Kitahata N et al (2007) ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed. Plant J 50:935–949. https://doi.org/10.1111/j.1365-313X.2007.03107.x
Nishina PM, North MA, Ikeda A et al (1998) Molecular characterization of a novel tubby gene family member, TULP3, in mouse and humans. Genomics 54:215–220. https://doi.org/10.1006/geno.1998.5567
Porra RJ (2002) The chequered history of the development and use of simultaneous equations for the accurate determination of chlorophylls a and b. Photosynth Res 73:149–156
Reitz MU, Bissue JK, Zocher K et al (2012) The subcellular localization of tubby-like proteins and participation in stress signaling and root colonization by the mutualist Piriformospora indica. Plant Physiol 160:349–364. https://doi.org/10.1104/pp.112.201319
Riboni M, Galbiati M, Tonelli C, Conti L (2013) GIGANTEA enables drought escape response via abscisic acid-dependent activation of the florigens and suppressor of overexpression of CONSTANS11[c][w]. Plant Physiol 162:1706–1719. https://doi.org/10.1104/pp.113.217729
Risseeuw EP, Daskalchuk TE, Banks TW, Liu E, Cotelesage J, Hellmann H, Estelle M, Somers DE, Crosby WL (2003) Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Plant J 34:753–767
Santagata S, Boggon TJ, Baird CL et al (2001) G-protein signaling through tubby proteins. Science 292:2041–2050. https://doi.org/10.1126/science.1061233
Shu K, Liu XD, Xie Q, He ZH (2016) Two faces of one seed: hormonal regulation of dormancy and germination. Mol Plant 9:34–45. https://doi.org/10.1016/j.molp.2015.08.010
Slawinski L, Israel A, Artault C et al (2021) Responsiveness of early response to dehydration six-like transporter genes to water deficit in Arabidopsis thaliana leaves. Front Plant Sci 12:1–21. https://doi.org/10.3389/fpls.2021.708876
Song W-m, Cheng Z-h, Guo X-t et al (2019) Overexpression of NHL6 affects seed production in transgenic Arabidopsis plants. Plant Growth Regul 88:41–47. https://doi.org/10.1007/s10725-019-00486-2
Verslues PE, Agarwal M, Katiyar-Agarwal S et al (2006) Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. Plant J 45:523–539. https://doi.org/10.1111/j.1365-313X.2005.02593.x
Vierstra RD (2009) The ubiquitin-26S proteasome system at the nexus of plant biology. Nat Rev Mol Cell Biol 10:385–397. https://doi.org/10.1038/nrm2688
Wang C, Liu S, Dong Y et al (2016) PdEPF1 regulates water-use efficiency and drought tolerance by modulating stomatal density in poplar. Plant Biotechnol J 14:849–860. https://doi.org/10.1111/pbi.12434
Wang J, Zhang L, Cao Y et al (2018) CsATAF1 positively regulates drought stress tolerance by an ABA-dependent pathway and by promoting ROS scavenging in cucumber. Plant Cell Physiol 59:930–945. https://doi.org/10.1093/pcp/pcy030
Wang M, Xu Z, Ahmed RI et al (2019) Tubby-like Protein 2 regulates homogalacturonan biosynthesis in Arabidopsis seed coat mucilage. Plant Mol Biol 99:421–436. https://doi.org/10.1007/s11103-019-00827-9
Wardhan V, Jahan K, Gupta S et al (2012) Overexpression of CaTLP1, a putative transcription factor in chickpea (Cicer arietinum L.), promotes stress tolerance. Plant Mol Biol 79:479–493. https://doi.org/10.1007/s11103-012-9925-y
Wardhan V, Pandey A, Chakraborty S, Chakraborty N (2016) Chickpea transcription factor CaTLP1 interacts with protein kinases, modulates ROS accumulation and promotes ABA-mediated stomatal closure. Sci Rep 6:1–16. https://doi.org/10.1038/srep38121
Wu Y, Deng Z, Lai J et al (2009) Dual function of Arabidopsis ATAF1 in abiotic and biotic stress responses. Cell Res 19:1279–1290. https://doi.org/10.1038/cr.2009.108
Xu J, Xing S, Sun Q et al (2019) The expression of a tubby-like protein from Malus domestica (MdTLP7) enhances abiotic stress tolerance in Arabidopsis. BMC Plant Biol 19:1–8. https://doi.org/10.1186/s12870-019-1662-9
Xu JN, Xing SS, Zhang ZR et al (2016) Genome-wide identification and expression analysis of the tubby-like protein family in the Malus domestica genome. Front Plant Sci 7:1–12. https://doi.org/10.3389/fpls.2016.01693
Yang Z, Zhou Y, Wang X et al (2008) Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar. Genomics 92:246–253. https://doi.org/10.1016/j.ygeno.2008.06.001
Yoo CY, Pence HE, Jin JB et al (2010) The Arabidopsis GTL1 transcription factor regulates water use efficiency and drought tolerance by modulating stomatal density via transrepression of SDD1. Plant Cell 22:4128–4141. https://doi.org/10.1105/tpc.110.078691
Yoo JH, Park CY, Kim JC et al (2005) Direct interaction of a divergent CaM isoform and the transcription factor, MYB2, enhances salt tolerance in Arabidopsis. J Biol Chem 280:3697–3706. https://doi.org/10.1074/jbc.M408237200
Yoshida S, Forno DA, Cock JH, Gomez KA (1976) Laboratory manual for physiological studies of rice, 3rd edn. International Rice Research Institute, Manila
Yoshida T, Fujita Y, Sayama H et al (2010) AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J 61:672–685. https://doi.org/10.1111/j.1365-313X.2009.04092.x
Zhang Y, He X, Su D et al (2020) Comprehensive profiling of tubby-like protein expression uncovers ripening-related TLP genes in tomato (Solanum lycopersicum). Int J Mol Sci 21:1–14. https://doi.org/10.3390/ijms21031000
Zhao H, Nie K, Zhou H et al (2020) ABI5 modulates seed germination via feedback regulation of the expression of the PYR/PYL/RCAR ABA receptor genes. New Phytol 228:596–608. https://doi.org/10.1111/nph.16713
Zhao Y, Zhang Z, Gao J et al (2018) Arabidopsis duodecuple mutant of PYL ABA receptors reveals PYL repression of ABA-independent SnRK2 activity. Cell Rep 23:3340-3351.e5. https://doi.org/10.1016/j.celrep.2018.05.044
Zheng Z, Xu X, Crosley RA et al (2010) The protein kinase SnRK2.6 mediates the regulation of sucrose metabolism and plant growth in Arabidopsis. Plant Physiol 153:99–113. https://doi.org/10.1104/pp.109.150789
Funding
This research was funded by the Department of Science and Technology (DST), Government of India and J.C. Bose National Fellowship to JPK (SB/SR/JCB-13/2013) by the Science and Engineering Research Board (SERB), Government of India. Authors also acknowledge infrastructural support by the Department of Science and Technology (FIST and PURSE programs), Government of India, and the University Grants Commission (UGC-SAP), New Delhi. NJ thanks the Council of Scientific and Industrial Research (CSIR), New Delhi, for providing financial assistance in the form of RA Fellowship.
Author information
Authors and Affiliations
Contributions
NJ and JPK designed the research plan. NJ performed the experiments, analyzed the data and wrote the manuscript. JPK and PK critically supervised the progress of the research, gave vital inputs in the improvement of the research work, and edited the manuscript. JPK funded the cost of the entire research through his grants. All authors have read and approve the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Additional information
Handling Editor: Bhumi Nath Tripathi
Publisher's note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Keynote
The rice Tubby-like protein (TLP) encoding gene, OsFBT4, plays role in both ABA-dependent and independent stress signalling and its overexpression confers stage-specific tolerance to salt, drought, and other abiotic stresses in Arabidopsis.
Supplementary Information
Below is the link to the electronic supplementary material.
709_2022_1831_MOESM1_ESM.pdf
Supplementary file1 (PDF 455 KB) Fig S1. Exon organization of OsFBT4 and its translated product and validation of the OsFBT4-OE lines in Arabidopsis. (A) and (B) represents the organization of the OsFBT4- cDNA and its translated product, respectively. (C) and (D) represents the genomic DNA PCR- based confirmation of the OE lines, using a combination of CaMV 35S promoter-F and OsFBT4-R primers (1.3 kb), and NPT-II gene specific primers, respectively. The transcript level of OsFBT4 in the OE lines quantified by RT-qPCR using Actin-II as internal control is presented in (E). The asterisk marks (*) indicate significant difference (P-value<0.05). Fig S2. Response of the OsFBT4-OE lines at 15-d old plant stage to ABA and paraquat. (A) depicts growth response of the OE lines to exogenous ABA (15 µM) and paraquat (2 µM) after 15 days on the stress media. Physiological measurements such as Fv/Fm values (B); total chlorophyll content (C); and final rosette diameter (D) after completion of 15 days on the stress media are graphically presented. The results are represented as mean ± SE, where n=3. The asterisk marks (*) indicate significant difference (P-value<0.05). Fig S3. Estimation of membrane injury parameters in 15-d old OsFBT4-OE plants in response to different abiotic stresses. (A) depicts overall ROS (H2O2) accumulation in 15-d old plants as seen by DAB staining; (B) graphically represents the Fv/Fm values; (C) shows the total chlorophyll content (represented in mg/g fresh wt.); the ion leakage percentages are presented graphically in (D). (E) and (F) shows the MDA and proline content of the plants, respectively, in response to different stresses. The results are represented as mean ± SE, where n=3. The asterisk marks (*) indicate significant difference (P-value<0.05).
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Jain, N., Khurana, P. & Khurana, J.P. Overexpression of a rice Tubby–like protein-encoding gene, OsFBT4, confers tolerance to abiotic stresses. Protoplasma 260, 1063–1079 (2023). https://doi.org/10.1007/s00709-022-01831-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00709-022-01831-5