Abstract
DSS1 is a small protein, highly conserved across different species. As a member of the intrinsically disordered protein family, DSS1 interacts with different protein partners, thus forming complexes involved in diverse biological mechanisms: DNA repair, regulation of protein homeostasis, mRNA export, etc. Additionally, DSS1 has a novel intriguing role in the post-translational protein modification named DSSylation. Oxidatively damaged proteins are targeted for removal with DSS1 and then degraded by proteasome. Yet, DSS1 involvement in the maintenance of genome integrity through homologous recombination is the only function well studied in Arabidopsis research. The fact that animal DSS1 shows wide multifunctionality imposes a need to investigate the additional roles of two Arabidopsis thaliana DSS1 homologs. Having in mind the universality of various biological processes, we considered the possibility of plant DSS1 involvement in cellular homeostasis maintenance during stress exposure. Using real-time PCR and immunoblot analysis, we investigated the profiles of DSS1 gene and protein expression under oxidative stress. We grew and selected the homozygous Arabidopsis mutant line, carrying the T-DNA intron insertion in the DSS1(V) gene. The mutant line was phenotypically described during plant development, and its sensitivity to oxidative stress was characterized. This is the first report which indicates that plant DSS1 gene expression has an altered profile under the influence of oxidative stress. dss1(V)−/− plants showed an increased sensitivity to oxidative stress, germinated faster than WT, but generally showed developmental delay in further stages. Our results indicate that the DSS1 protein could be a crucial player in the molecular mechanisms underlying plant abiotic stress responses.
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Data availability
The data and material that support the findings of this study are available from the corresponding author upon reasonable request.
Abbreviations
- ABA:
-
Abscisic acid
- BRCA2:
-
Breast cancer 2
- BSA:
-
Bovine serum albumin
- DNP hydrazine:
-
2,4-Dinitrophenilhydrazone
- DSS1:
-
Deleted in Split Hand/Split Foot Protein 1
- DTT:
-
Dithiothreitol
- EDTA:
-
Ethylenediaminetetraacetic acid
- FW:
-
Fresh weight
- HRP:
-
Horseradish peroxidase
- MDA:
-
Malondialdehyde
- MeJA:
-
Methyl jasmonate
- MV:
-
Methyl viologen
- NPC:
-
Nuclear pore complex
- PBST:
-
Phosphate buffered saline with Tween® 20
- PMSF:
-
Phenylmethylsulfonyl fluoride
- PSI:
-
Photosystem I
- PVDF:
-
Polyvinylidene difluoride membrane
- ROS:
-
Reactive oxygen species
- RPA:
-
Replication protein A
- SA:
-
Salicylic acid
- SDS:
-
Sodium dodecyl sulfate
- SEM1:
-
Suppressor of Exocyst Mutations 1
- SHSF:
-
Split hand/split foot malformation
- TBA:
-
Thiobarbituric acid
- TCA:
-
Trichloroacetic acid
- TREX-2:
-
Transcription-export-2
References
Akter S, Carpentie S, Van Breusegem F, Messens J (2017) Identification of dimedone-trapped sulfenylated proteins in plants under stress. Biochem Biophys Rep 9:106–113. https://doi.org/10.1016/j.bbrep.2016.11.014
Bipeng W, HaiYan D, Qiqi C, Li O, Shengchun L, Jiang Z (2019) Enhanced tolerance to methyl viologen-mediated oxidative stress via AtGR2 expression from chloroplast genome. Front Plant Sci 10:1178. https://doi.org/10.3389/fpls.2019.01178
Claeys H, Van Landeghem S, Dubois M, Maleux K, Inzé D (2014) What is stress? Dose-response effects in commonly used in vitro stress assays. Plant Physiol 165(2):519–527. https://doi.org/10.1104/pp.113.234641
Conn SJ, Hocking B, Dayod M, Xu B, Athman A, Henderson S, Aukett L, Conn V, Shearer MK, Fuentes S, Tyerman SD, Gilliham M (2013) Protocol: optimising hydroponic growth systems for nutritional and physiological analysis of Arabidopsis thaliana and other plants. Plant Methods 9(1):4. https://doi.org/10.1186/1746-4811-9-4
Crackower MA, Scherer SW, Rommens JM, Hui CC, Poorkaj P, Soder S, Cobben JM, Hudgins L, Evans JP, Tsui LC (1996) Characterization of the split hand/split foot malformation locus SHFM1 at 7q21.3-q22.1 and analysis of a candidate gene for its expression during limb development. Hum Mol Genet 5(5):571–579. https://doi.org/10.1093/hmg/5.5.571
Delgado S, Velinov M (2015) 7q21.3 deletion involving enhancer sequences within the gene DYNC1I1 presents with intellectual disability and split hand-split foot malformation with decreased penetrance. Mol Cytogenet 8:37. https://doi.org/10.1186/s13039-015-0139-2
Desikan R, A-H-Mackerness S, Hancock JT, Neill SJ (2001) Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol 127(1):159–172. https://doi.org/10.1104/pp.127.1.159
Dray E, Siaud N, Dubois E, Doutriaux MP (2006) Interaction between Arabidopsis Brca2 and its partners Rad51, Dmc1, and Dss1. Plant Physiol 140(3):1059–1069. https://doi.org/10.1104/pp.105.075838
El-Maarouf-Bouteau H, Bailly C (2008) Oxidative signaling in seed germination and dormancy. Plant Signal Behav 3(3):175–182. https://doi.org/10.4161/psb.3.3.5539
El-Maarouf-Bouteau H, Meimoun P, Job C, Job D, Bailly C (2013) Role of protein and mRNA oxidation in seed dormancy and germination. Front Plant Sci 4:77. https://doi.org/10.3389/fpls.2013.00077
Faza MB, Kemmler S, Jimeno S, González-Aguilera C, Aguilera A, Hurt E, Panse VG (2009) Sem1 is a functional component of the nuclear pore complex-associated messenger RNA export machinery. J Cell Biol 184(6):833–846. https://doi.org/10.1083/jcb.200810059
Hodges DM, De Long JM, Forne CF, Prange RK (1999) Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds. Planta 207(4):604–611. https://doi.org/10.1007/s004250050524
Hsiao TC, Xu LK (2000) Sensitivity of growth of roots versus leaves to water stress: biophysical analysis and relation to water transport. J Exp Bot 51(350):1595–1616. https://doi.org/10.1093/jexbot/51.350.1595
Jäntti J, Lahdenranta J, Olkkonen VM, Söderlund H, Keränen S (1999) SEM1, a homologue of the split hand/split foot malformation candidate gene Dss1, regulates exocytosis and pseudohyphal differentiation in yeast. Proc Natl Acad Sci U S A 96(3):909–914. https://doi.org/10.1073/pnas.96.3.909
Kojic M, Yang H, Kostrub CF, Pavletich NP, Holloman WK (2003) The BRCA2-interacting protein DSS1 is vital for DNA repair, recombination, and genome stability in Ustilago maydis. Mol Cell 12(4):1043–1049. https://doi.org/10.1016/s1097-2765(03)00367-8
Kragelund BB, Schenstrøm SM, Rebula CA, Panse VG, Hartmann-petersen R (2016) DSS1/Sem1, a multifunctional and intrinsically disordered protein. Trends Biochem Sci 41(5):446–459. https://doi.org/10.1016/j.tibs.2016.02.004
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30(1):325–327. https://doi.org/10.1093/nar/30.1.325
Marston NJ, Richards WJ, Hughes D, Bertwistle D, Marshall CJ, Ashworth A (1999) Interaction between the product of the breast cancer susceptibility gene BRCA2 and DSS1, a protein functionally conserved from yeast to mammals. Mol Cell Biol 19(7):4633–4642. https://doi.org/10.1128/mcb.19.7.4633
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiologia Plantarum 15:473–497
Paraskevopoulos K, Kriegenburg F, Tatham MH, Rösner HI, Medina B, Larsen IB, Brandstrup R, Hardwick KG, Hay RT, Kragelund BB, Hartmann-Petersen R, Gordon C (2014) Dss1 is a 26S proteasome ubiquitin receptor. Mol Cell 56(3):453–461. https://doi.org/10.1016/j.molcel.2014.09.008
Pispa J, Palmén S, Holmberg CI, Jäntti J (2008) C. elegans dss-1 is functionally conserved and required for oogenesis and larval growth. BMC Dev Biol 8:51. https://doi.org/10.1186/1471-213X-8-51
Rodríguez MC, Wawrzyńska A, Sirko A (2014) Intronic T-DNA insertion in Arabidopsis NBR1 conditionally affects wild-type transcript level. Plant Signal Behav 9(12):e975659. https://doi.org/10.4161/15592324.2014.975659
Tomko RJ, Hochstrasser M (2014) The intrinsically disordered Sem1 protein functions as a molecular tether during proteasome lid biogenesis. Mol Cell 53(3):433–443. https://doi.org/10.1016/j.molcel.2013.12.009
Uversky VN (2011) Intrinsically disordered proteins from A to Z. Int J Biochem Cell Biol 43(8):1090–1103. https://doi.org/10.1016/j.biocel.2011.04.001
Verslues PE, Agarwal M, Katiyar-Agarwal S, Zhu J, Zhu JK (2006) Methods and concepts in quantifying resistance to drought, salt and freezing, abiotic stresses that affect plant water status. Plant J 45(4):523–539. https://doi.org/10.1111/j.1365-313X.2005.02593.x
Wang YH (2008) How effective is T-DNA insertional mutagenesis in Arabidopsis? J Biochem Tech 1(1):11–20
Wang Z, Chen F, Li X, Cao H, Ding M, Zhang C, Zuo J, Xu C, Xu J, Deng X, Xiang Y, Soppe WJJ, Liu Y (2016) Arabidopsis seed germination speed is controlled by SNL histone deacetylase-binding factor-mediated regulation of AUX1. Nat Commun 7:13412. https://doi.org/10.1038/ncomms13412
Yang H, Jeffrey PD, Miller J, Kinnucan E, Sun Y, Thoma NH, Zheng N, Chen PL, Lee WH, Pavletich NP (2002) BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure. Science 297(5588):1837–1848. https://doi.org/10.1126/science.297.5588.1837
Zhang Y, Chang FM, Huang J, Junco JJ, Maffi SK, Pridgen HI, Catano G, Dang H, Ding X, Yang F, Kim DJ, Slaga TJ, He R, Wei SJ (2014) DSSylation, a novel protein modification targets proteins induced by oxidative stress, and facilitates their degradation in cells. Protein Cell 5(2):124–140. https://doi.org/10.1007/s13238-013-0018-8
Acknowledgments
The authors are grateful to Dr. Milorad Kojić for giving us an idea and immense motivation to conduct this investigation. We owe a debt of gratitude to Dr. Vesna Maksimović for encouragement and useful suggestions. Also, this project could not be accomplished without the support and technical advices of Dr. Jelena Brkljačić. We greatly acknowledge the ABRC and NASC for SALK_069888 seed stock distribution. We thank the Salk Institute Genomic Analysis Laboratory for providing the sequence-indexed Arabidopsis. This work was funded by the Ministry of Education, Science and Technological Development of the Republic of Serbia, registration number: 451-03-68/2020-14/200042 agreement on the implementation and financing of research work in 2020.
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This work was funded by the Ministry of Education, Science and Technological Development of the Republic of Serbia, registration number: 451-03-68/2020-14/200042 agreement on the implementation and financing of research work in 2020.
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Gordana Timotijević and Ivana Nikolić contributed to the idea and experimental design and carried out experimental work. Data analysis and the first draft of the manuscript was written by Gordana Timotijević. Jelena Samardžić and Sofija Nešić contributed to experiments regarding the plant genotyping and provided critical feedback and analysis of the manuscript. All authors read and approved the final manuscript.
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Nikolić, I.P., Nešić, S.B., Samardžić, J.T. et al. Intrinsically disordered protein AtDSS1(V) participates in plant defense response to oxidative stress. Protoplasma 258, 779–792 (2021). https://doi.org/10.1007/s00709-020-01598-7
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DOI: https://doi.org/10.1007/s00709-020-01598-7