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Complete nucleotide sequence of hemisteptia virus A, a polero-like virus

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Abstract

The complete genomic nucleotide sequence of hemisteptia virus A (HemVA) from a Hemisteptia lyrata Bunge plant in South Korea was identified by high-throughput sequencing. The HemVA genome consists of 6,122 nucleotides and contains seven putative open reading frames, ORF0–5 and ORF3a, encoding the putative proteins P0–P5 and P3a, respectively. Pairwise amino acid sequence analysis shows that the HemVA P1–P5 proteins have the highest sequence identity (23.68%-54.15%) to the corresponding proteins of members of the families Solemoviridae and Tombusviridae. Phylogenetic analysis of the P1–P2 and P3 amino acid sequences indicated that HemVA should be classified as a member of a distinct species in the genus Polerovirus.

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References

  1. Cho IJ, Kim JK, Kim EO, Park SM, Kim SC, Ki SH, Ku SK (2021) Hemistepsin A induces apoptosis of hepatocellular carcinoma cells by downregulating STAT3. Int J Mol Sci 22:4743

    Article  CAS  Google Scholar 

  2. Sõmera M, Fargette D, Hébrard E, Sarmiento C, IR Consortium (2021) ICTV virus taxonomy profile: Solemoviridae 2021. J Gen Virol 102:001707

    Article  Google Scholar 

  3. Delfosse VC, Barrios Barón MP, Distéfano AJ (2021) What we know about poleroviruses: advances in understanding the functions of polerovirus proteins. Plant Pathol 70:1047–1061

    Article  Google Scholar 

  4. Domier L (2012) Family luteoviridae. Virus taxonomy: ninth report of the International Committee on the Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, pp 1045–1053

    Google Scholar 

  5. Smirnova E, Firth AE, Miller WA, Scheidecker D, Brault V, Reinbold C, Rakotondrafara AM, Chung BY-W, Ziegler-Graff V (2015) Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement. PLoS Pathog 11:e1004868

    Article  Google Scholar 

  6. Igori D, Lim S, Cho HS, Kim HS, Park JM, Lee H-J, Hong K-J, Kwon SY, Moon JS (2021) Complete genome sequence of artemisia virus B, a new polerovirus infecting Artemisia princeps in South Korea. Arch Virol 166:1495–1499

    Article  CAS  Google Scholar 

  7. Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549

    Article  CAS  Google Scholar 

  8. Moonan F, Molina J, Mirkov TE (2000) Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology 269:156–171

    Article  CAS  Google Scholar 

  9. Chiaki Y, Ito T (2020) Complete genome sequence of a novel putative polerovirus detected in grapevine. Arch Virol 165:1007–1010

    Article  CAS  Google Scholar 

  10. Filardo FF, Sharman M (2019) Siratro latent polerovirus (SLPV): a new polerovirus from Australia with a non-functional open reading frame 0. Aust Plant Pathol 48:491–501

    Article  CAS  Google Scholar 

  11. Silva JMF, Al Rwahnih M, Blawid R, Nagata T, Fajardo TVM (2017) Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. Virus Gen 53:667–671

    Article  CAS  Google Scholar 

  12. Kavi Sidharthan V, Nagendran K, Baranwal VK (2022) Exploration of plant transcriptomes reveals five putative novel poleroviruses and an enamovirus. Virus Gen 58:244–253

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This study was supported by the KRIBB Research Initiative Program, which is funded by the Ministry of Science and ICT, Republic of Korea (No. KGM5372221). We thank Steven M. Thompson from Edanz (www.edanz.com/ac) for editing a draft of this manuscript.

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Authors and Affiliations

  1. Department of Biology, School of Mathematics and Natural Sciences, Mongolian National University of Education, Ulaanbaatar, Mongolia

    Davaajargal Igori

  2. Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea

    Davaajargal Igori, Se Eun Kim, Ah Young Shin, Suk‑Yoon Kwon & Jae Sun Moon

  3. Plant Quarantine Technology Center, Department of Plant Quarantine, Animal and Plant Quarantine Agency, Gimcheon, 39660, Republic of Korea

    Seungmo Lim

  4. Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 34113, Republic of Korea

    Suk‑Yoon Kwon & Jae Sun Moon

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  1. Davaajargal Igori
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  2. Seungmo Lim
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  3. Se Eun Kim
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Correspondence to Suk‑Yoon Kwon or Jae Sun Moon.

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Igori, D., Lim, S., Kim, S.E. et al. Complete nucleotide sequence of hemisteptia virus A, a polero-like virus. Arch Virol 167, 2767–2770 (2022). https://doi.org/10.1007/s00705-022-05571-y

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  • DOI: https://doi.org/10.1007/s00705-022-05571-y

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