Skip to main content
Log in

The complete genome sequence of a novel mycovirus in the plant-pathogenic fungus Exobasidium gracile

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

The plant-pathogenic fungus Exobasidium gracile belongs to the basidiomycetous genus Exobasidium and causes leaf abnormalities in Camellia oleifera. Here, we report a novel mycovirus from E. gracile strain Z-2, called “Exobasidium gracile zybavirus 2” (EgZV2), which is related phylogenetically to a member of the genus Zybavirus in the family Amalgaviridae. Like those of other zybaviruses, the EgZV2 genome has two large open reading frames (ORFs) encoding an unknown protein and an RNA-dependent RNA polymerase (RdRp), respectively. In addition, we found a conserved +1 programmed ribosomal frameshifting (PRF) motif (UUUCGG) between ORF1 and ORF2 in EgZV2.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  1. Lee CK, Lee SH, Shin HD, Park JH, Sieber T (2015) First report of Exobasidium gracile causing hypertrophied leaves of Camellia sasanquain South Korea. Forest Pathol 45(3):258–261

    Article  Google Scholar 

  2. Dong Z, Liu W, Zhou D, Li P, Wang T, Sun K, Zhao Y, Wang J, Wang B, Chen Y (2019) Bioactive exopolysaccharides reveal Camellia oleifera infected by the fungus Exobasidium gracile could have a functional use. Molecules 24(11):2048

    Article  CAS  Google Scholar 

  3. Kotta-Loizou I (2019) Mycoviruses past, present, and future. Viruses 11(4):361

    Article  Google Scholar 

  4. Li P, Wang S, Zhang L, Qiu D, Zhou X, Guo L (2020) A tripartite ssDNA mycovirus from a plant pathogenic fungus is infectious as cloned DNA and purified virions. Sci Adv 6(14):eaay9634

    Article  CAS  Google Scholar 

  5. Zhang T, Cai X, Zeng Z, Du H, Liu H (2020) A novel totivirus isolated from the phytopathogenic fungus Rhodosporidiobolus odoratus strain GZ2017. Arch Virol 165(8):1911–1914

    Article  CAS  Google Scholar 

  6. Park D, Hahn Y (2017) Genome sequences of Spinach Deltapartitivirus 1, Spinach Amalgavirus 1, and Spinach Latent Virus identified in Spinach transcriptome. J Microbiol Biotechnol 27(7):1324–1330

    Article  CAS  Google Scholar 

  7. Vainio EJ, Sutela S (2020) Mixed infection by a partitivirus and a negative-sense RNA virus related to mymonaviruses in the polypore fungus Bondarzewia berkeleyi. Virus Res 286:198079

    Article  CAS  Google Scholar 

  8. Nibert ML, Pyle JD, Firth AE (2016) A +1 ribosomal frameshifting motif prevalent among plant amalgaviruses. Virology 498:201–208

    Article  CAS  Google Scholar 

  9. Park D, Goh CJ, Kim H, Hahn Y (2018) Identification of two novel amalgaviruses in the common eelgrass (Zostera marina) and in silico analysis of the Amalgavirus +1 programmed ribosomal frameshifting sites. Plant Pathol J 34(2):150–156

    Article  CAS  Google Scholar 

  10. Depierreux D, Vong M, Nibert ML (2016) Nucleotide sequence of Zygosaccharomyces bailii virus Z: Evidence for +1 programmed ribosomal frameshifting and for assignment to family Amalgaviridae. Virus Res 217:115–124

    Article  CAS  Google Scholar 

  11. Pyle JD, Keeling PJ, Nibert ML (2017) Amalga-like virus infecting Antonospora locustae, a microsporidian pathogen of grasshoppers, plus related viruses associated with other arthropods. Virus Res 233:95–104

    Article  CAS  Google Scholar 

  12. Lee JS, Goh CJ, Park D, Hahn Y (2019) Identification of a novel plant RNA virus species of the genus Amalgavirus in the family Amalgaviridae from chia (Salvia hispanica). Genes Genomics 41:507–514

    Article  CAS  Google Scholar 

  13. Goh CJ, Park D, Lee JS, Sebastiani F, Hahn Y (2018) Identification of a novel plant amalgavirus (Amalgavirus, Amalgaviridae) genome sequence in Cistus incanus. Acta Virol 62(2):122–128

    Article  CAS  Google Scholar 

  14. Zhang T, Cai X, Teng L, Li X, Zhong N, Liu H (2022) Molecular characterization of three novel mycoviruses in the plant pathogenic fungus Exobasidium gracile. Virus Res 307:198608

    Article  CAS  Google Scholar 

  15. Morris TJ, Dodds JA (1979) Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69(8):854–858

    Article  CAS  Google Scholar 

  16. Xie J, Wei D, Jiang D, Fu Y, Li G, Ghabrial S, Peng Y (2006) Characterization of debilitation-associated mycovirus infecting the plant-pathogenic fungus Sclerotinia sclerotiorum. J Gen Virol 87(Pt 1):241–249

    Article  CAS  Google Scholar 

  17. Lambden PR, Cooke SJ, Caul EO, Clarke IN (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66(3):1817–1822

    Article  CAS  Google Scholar 

  18. Zadeh JN, Steenberg CD, Bois JS, Wolfe BR, Pierce MB, Khan AR, Dirks RM, Pierce NA (2011) NUPACK: analysis and design of nucleic acid systems. J Comput Chem 32(1):170–173

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by the National Natural Science Foundation of China (grant numbers 31760015) and Guizhou Provincial Natural Science Foundation (grant numbers ZK [2021]081, [2018]5779-53).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Hongmei Liu or Tingting Zhang.

Ethics declarations

Conflict of interest

The authors declare no competing interests.

Ethical approval

This article does not contain any studies involving human participants or animals.

Additional information

Handling Editor: Ioly Kotta-Loizou.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Teng, L., Li, X., Cai, X. et al. The complete genome sequence of a novel mycovirus in the plant-pathogenic fungus Exobasidium gracile. Arch Virol 167, 1343–1347 (2022). https://doi.org/10.1007/s00705-022-05421-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-022-05421-x

Navigation