Abstract
A novel mycovirus belonging to the proposed family “Fusariviridae” was discovered in Alternaria solani by sequencing a cDNA corresponding to double-stranded RNA extracted from this phytopathogenic fungus. The virus was tentatively named “Alternaria solani fusarivirus 1” (AsFV1). AsFV1 has a single-stranded positive-sense (+ssRNA) genome of 6845 nucleotides containing three open reading frames (ORFs) and a poly(A) tail. The largest ORF, ORF1, encodes a large polypeptide of 1,556 amino acids (aa) with conserved RNA-dependent RNA polymerase and helicase domains. The ORF2 and ORF3 have overlapping regions, encoding a putative protein of 522 amino acids (aa) and a putative protein of 105 amino acids (aa), respectively, both of unknown function. A multiple sequence alignment and phylogenetic analysis revealed that AsFV1 could be a new member of the “Fusariviridae”. This is the first report of the full-length nucleotide sequence of a fusarivirus that infects Alternaria solani.
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References
Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384
Lin Y, Zhang H, Zhao C, Liu S, Guo L (2015) The complete genome sequence of a novel mycovirus from Alternaria longipes strain HN28. Arch Virol 160:577–580
Okada R, Ichinose S, Takeshita K, Urayama SI, Fukuhara T, Komatsu K et al (2018) Molecular characterization of a novel mycovirus in Alternaria alternata manifesting two-sided effects: down-regulation of host growth and up-regulation of host plant pathogenicity. Virology 519:23–32
da Silva Xavier A, de Barros APO, Godinho MT, Zerbini FM, de Oliveira Souza F, Bruckner FP, Alfenas-Zerbini P (2018) A novel mycovirus associated to Alternaria alternata comprises a distinct lineage in Partitiviridae. Virus Res 244:21–26
Hu Z, Guo J, Da Gao B, Zhong J (2020) A novel mycovirus isolated from the plant-pathogenic fungus Alternaria dianthicola. Arch Virol 165:2105–2109
Komatsu K, Katayama Y, Omatsu T, Mizutani T, Fukuhara T, Kodama M et al (2016) Genome sequence of a novel victorivirus identified in the phytopathogenic fungus Alternaria arborescens. Arch Virol 161:1701–1704
Li H, Bian R, Liu Q, Yang L, Pang T, Salaipeth L et al (2019) Identification of a novel hypovirulence-inducing hypovirus from Alternaria alternata. Front Microbiol 10:1076
Zhong J, Shang HH, Zhu CX, Zhu JZ, Zhu HJ, Hu Y, Da Gao B (2016) Characterization of a novel single-stranded RNA virus, closely related to fusariviruses, infecting the plant pathogenic fungus Alternaria brassicicola. Virus Res 217:1–7
Ghabrial SA, Castón JR, Jiang D, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368
Pearson MN, Beever RE, Boine B, Arthur K (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115–128
Nuss DL (1992) Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol Rev 56:561–576
Yu X, Li B, Fu Y, Jiang D, Ghabrial SA, Li G et al (2010) A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc Natl Acad Sci USA 107:8387–8392
Yang D, Wu M, Zhang J, Chen W, Li G, Yang L (2018) Sclerotinia minor endornavirus 1, a novel pathogenicity debilitation-associated mycovirus with a wide spectrum of horizontal transmissibility. Viruses 10:589
Chu YM, Jeon JJ, Yea SJ, Kim YH, Yun SH, Lee YW, Kim KH (2002) Double-stranded RNA mycovirus from Fusarium graminearum. Appl Environ Microbiol 68:2529–2534
Zhang R, Liu S, Chiba S, Kondo H, Kanematsu S, Suzuki N (2014) A novel single-stranded RNA virus isolated from a phytopathogenic filamentous fungus, Rosellinia necatrix, with similarity to hypo-like viruses. Front Microbiol 5:360
Liu R, Cheng J, Fu Y, Jiang D, Xie J (2015) Molecular characterization of a novel positive-sense, single-stranded RNA mycovirus infecting the plant pathogenic fungus Sclerotinia sclerotiorum. Viruses 7:2470–2484
Morris TJ, Dodds JA (1979) Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858
Yang M, Zhai L, Xiao F, Guo Y, Fu M, Hong N, Wang G (2019) Characterization of a novel victorivirus isolated from the phytopathogenic fungus Botryosphaeria dothidea. Arch Virol 164:1609–1617
Thompson JD, Gibson TJ, Plewniak F (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
Nicholas KB (1997) GeneDoc: analysis and visualization of genetic variation. Embnew News 4:14
Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 33:1870–1874
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This study was supported by the Scientific Research Fund of the Hunan Provincial Education Department (19K040).
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Gong, W., Liu, H., Zhu, X. et al. Molecular characterization of a novel fusarivirus infecting the plant-pathogenic fungus Alternaria solani. Arch Virol 166, 2063–2067 (2021). https://doi.org/10.1007/s00705-021-05105-y
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DOI: https://doi.org/10.1007/s00705-021-05105-y