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Genomic and phylodynamic analysis of sapoviruses isolated in Henan Province, China

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Abstract

In this study, we determined the near-complete and partial genome sequences of ten SaV isolates. Phylogenetic analysis based on full-length VP1 and RdRp nucleotide sequences indicated that nine isolates were of GI.1 and one was GII.3. Evolutionary dynamics analysis indicated that GI.1 and GII.3 SaVs evolved at different rates, the latter evolving more rapidly. Cluster analysis indicated that distantly related GI.1 SaVs were more similar in their amino acid compositions than were GII.3 SaVs. The data provided in this study may facilitate studies on SaV genomic diversity and epidemiological patterns in China and worldwide.

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Acknowledgements

We would like to thank Fangluan Gao from the Institute of Plant Virology, Fujian Agriculture and Forestry University, for his help in evolutionary analysis with BEAST software.

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Author notes

  1. Jinjin Liu, Na Ren, and Shanlei Hu contributed equally.

Authors and Affiliations

  1. The Sixth People’s Hospital of Zhengzhou, Zhengzhou, 450000, People’s Republic of China

    Jinjin Liu, Na Ren, Shanlei Hu, Lijun Zheng, Shuhuan Ma & Yuqi Huo

  2. Children’s Hospital, Affiliated to Zhengzhou University (Henan Children’s Hospital, Zhengzhou Children’s Hospital), Zhengzhou, People’s Republic of China

    Lili Ge

Authors
  1. Jinjin Liu
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  6. Shuhuan Ma
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Contributions

YH and SM conceived and designed the experiments. JL, LG, NR, and SH performed the experiments. JL supervised the experiments. JL, NR, and SH analyzed the data. YH prepared the manuscript.

Corresponding authors

Correspondence to Shuhuan Ma or Yuqi Huo.

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The authors declare no conflict of interest.

Research involving human participants and/or animals

This article does not contain any experiments with human participants or animals performed by any of the authors. Written informed consent was not required, as fecal samples were collected from a clinical laboratory that performed routine diagnosis and no specific information except age was recorded in this study. The ethical committee of the Sixth People’s Hospital of Zhengzhou approved this study.

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Liu, J., Ren, N., Hu, S. et al. Genomic and phylodynamic analysis of sapoviruses isolated in Henan Province, China. Arch Virol 166, 265–270 (2021). https://doi.org/10.1007/s00705-020-04876-0

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  • DOI: https://doi.org/10.1007/s00705-020-04876-0

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