Abstract
Here, we report the molecular characterization of a novel partitivirus from Phomopsis vexans strain PvHZ002, a plant-pathogenic fungus infecting eggplant. The virus was designated “Phomopsis vexans partitivirus 1” (PvPV1). PvPV1 contains two dsRNA segments, dsRNA1 and dsRNA2, which are 1,662 bp and 1,628 bp long, respectively. Each segment contains a single open reading frame, putatively encoding RNA-dependent RNA polymerase (dsRNA 1) and capsid protein (dsRNA 2). A homology search and phylogenetic analysis showed that PvPV1 clustered with viruses of the genus Deltapartitivirus of the family Partitiviridae.
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References
Hollings M (1962) Viruses associated with a die-back disease of cultivated mushroom. Nature 196:962–965
Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384
Nuss Donald L (2005) Hypovirulence: mycoviruses at the fungal-plant interface. Nat Rev Microbiol 3:632–642
Pearson MN, Beever RE, Boine B, Arthur K (2009) Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol Plant Pathol 10:115–128
Xie J, Jiang D (2014) New insights into mycoviruses and exploration for the biological control of crop fungal diseases. Annu Rev Phytopathol 52:45–68
Nibert ML, Ghabrial SA, Maiss E, Lesker T, Vainio EJ, Jiang D et al (2014) Taxonomic reorganization of family partitiviridae and other recent progress in partitivirus research. Virus Res 188:128–141
Ghabrial SA, Buck KW, Hillman BI, Milne RG (2005) Partitiviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eighth report of the international committee on taxonomy of viruses. Elsevier, San Diego, pp 581–590
Ghabrial SA, Ochoa WF, Baker TS, Nibert ML (2008) Partitiviruses: general features. In: Mahy BWJ, van Regenmortel MHV (eds) Encyclopedia of Virology. 3, vol 4. Elsevier, San Diego, pp 68–75
Ghabrial SA, Nibert ML, Maiss E, Lesker T, Baker TS, Tao YJ (2012) Partitiviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy: classification and nomenclature of viruses. Ninth report of the international committee on taxonomy of viruses. Elsevier, San Diego, pp 523–534
Telengech P, Hisano S, Mugambi C, Hyodo K, Manuel J, López A, Herrera CJL, Kanematsu S, Kondo H, Suzuki N (2020) Diverse partitiviruses from the phytopathogenic fungus, Rosellinia necatrix. Front Microbiol 11:1064
Nibert ML, Woods KM, Upton SJ, Ghabrial SA (2009) Cryspovirus: a new genus of protozoan viruses in the family Partitiviridae. Arch Virol 154:1959–1965
Vainio EJ, Chiba S, Ghabrial SA, Maiss E, Roossinck M, Sabanadzovic S, Suzuki N, Xie J, Nibert M (2018) ICTV Virus taxonomy profile: Partitiviridae. J Gen Virol 99:17–18
Nolla JAB (1929) The egg plant blight and fruit rot in Puerto Rico. J Dept Agric Puerto Rico 13:35–37
Das BH (1998) Studies on Phomopsis fruit rot of brinjal. Dissertation, University of Bangladesh Agricultural, Mymensingh. pp 106
Mahadevakumar S, Amruthavalli C, Sridhar KR, Janardhana GR (2017) Prevalence, incidence and molecular characterization of Phomopsis vexans (Diaporthe vexans) causing leaf blight and fruit rot disease of brinjal in Karnataka (India). Plant Pathol Quar 7:29–46
Morris TJ, Dodds JA (1979) Isolation and analysis of double stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
Bruenn JA (1993) A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res 21:5667–5669
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This research was supported by the third batch of major scientific research projects and innovation team cultivation project of Hunan Agricultural University (19ND03).
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Zhang, C.J., Zhou, X.Y., Zhong, J. et al. Complete nucleotide sequence of a novel partitivirus infecting the plant-pathogenic fungus Phomopsis vexans. Arch Virol 166, 291–294 (2021). https://doi.org/10.1007/s00705-020-04835-9
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DOI: https://doi.org/10.1007/s00705-020-04835-9