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Archives of Virology

, Volume 163, Issue 1, pp 105–114 | Cite as

Molecular analysis of the low-temperature Escherichia coli phage vB_EcoS_NBD2

  • Laura KalinieneEmail author
  • Lidija Truncaitė
  • Eugenijus Šimoliūnas
  • Aurelija Zajančkauskaitė
  • Monika Vilkaitytė
  • Algirdas Kaupinis
  • Martynas Skapas
  • Rolandas Meškys
Original Article

Abstract

A novel low-temperature Escherichia coli phage vB_EcoS_NBD2 was isolated in Lithuania from agricultural soil. With an optimum temperature for plating around 20 °C, vB_EcoS_NBD2 efficiently produced plaques on Escherichia coli NovaBlue (DE3) at a temperature range of 10–30 °C, yet failed to plate at temperatures above 35 °C. Phage vB_EcoS_NBD2 virions have a siphoviral morphology with an isometric head (65 nm in diameter), and a non-contractile flexible tail (170 nm). The 51,802-bp genome of vB_EcoS_NBD2 has a G + C content of 49.8%, and contains 87 probable protein-encoding genes as well as 1 gene for tRNASer. Comparative sequence analysis revealed that 22 vB_EcoS_NBD2 ORFs encode unique proteins that have no reliable identity to database entries. Based on homology to biologically defined proteins and/or proteomics analysis, 36 vB_EcoS_NBD2 ORFs were given a putative functional annotation, including 20 genes coding for morphogenesis-related proteins and 13 associated with DNA metabolism. Phylogenetic analysis revealed that vB_EcoS_NBD2 belongs to the subfamily Tunavirinae, but cannot be assigned to any genus currently recognized by ICTV.

Notes

Acknowledgments

This work was supported by the Research Council of Lithuania (Project No. SIT-7/2015).

Compliance with ethical standards

Conflict of interest

The authors declare no conflict of interests.

Human and animal rights statement

This article does not contain any studies with human participants or animals performed by any of the authors.

Supplementary material

705_2017_3589_MOESM1_ESM.pdf (3.8 mb)
Supplementary material 1 (PDF 3910 kb)

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Copyright information

© Springer-Verlag GmbH Austria 2017

Authors and Affiliations

  • Laura Kaliniene
    • 1
    Email author
  • Lidija Truncaitė
    • 1
  • Eugenijus Šimoliūnas
    • 1
  • Aurelija Zajančkauskaitė
    • 1
  • Monika Vilkaitytė
    • 1
  • Algirdas Kaupinis
    • 2
  • Martynas Skapas
    • 3
  • Rolandas Meškys
    • 1
  1. 1.Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences CenterVilnius UniversityVilniusLithuania
  2. 2.Proteomics Center, Institute of Biochemistry, Life Sciences CenterVilnius UniversityVilniusLithuania
  3. 3.Centre for Physical Sciences and TechnologyVilniusLithuania

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