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Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum

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Abstract

Two novel viruses, isolated in Bonghwa, Republic of Korea, from an Ixeridium dentatum plant with yellowing mottle symptoms, have been provisionally named Ixeridium yellow mottle-associated virus 1 (IxYMaV-1) and Ixeridium yellow mottle-associated virus 2 (IxYMaV-2). IxYMaV-1 has a genome of 6,017 nucleotides sharing a 56.4% sequence identity with that of cucurbit aphid-borne yellows virus (genus Polerovirus). The IxYMaV-2 genome of 4,196 nucleotides has a sequence identity of less than 48.3% with e other species classified within the genus Umbravirus. Genome properties and phylogenetic analysis suggested that IxYMaV-1 and -2 are representative isolates of new species classifiable within the genus Polerovirus and Umbravirus, respectively.

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Acknowledgments

This research was supported by the KRIBB initiative program funded by Korean government (MISP: Ministry of Science, ICT and Future Planning). This work was financially supported by the National Research Foundation of Korea (NRF-2014M3C9A3068822).

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Author notes

  1. Ran Hee Yoo

    Present address: Food Microbiology Division, Food Safety Evaluation Department, National Institute of Food and Drug Safety Evaluation, Cheongju, 28159, Republic of Korea

  2. Seungmo Lim

    Present address: Crop Production Technology Research Division, National Institute of Crop Science, Rural Development Administration, Miryang, 50424, Republic of Korea

  3. Fumei Zhao

    Present address: Institute of Plant Protection, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China

  4. Ran Hee Yoo and Seung-Won Lee contributed equally to this study.

Authors and Affiliations

  1. College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea

    Seung-Won Lee & Su-Heon Lee

  2. Molecular Biofarming Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Republic of Korea

    Ran Hee Yoo, Seungmo Lim, Fumei Zhao, Davaajargal Igori, Dasom Baek & Jae Sun Moon

  3. Biosystems and Bioengineering Program, University of Science and Technology, Daejeon, 34113, Republic of Korea

    Davaajargal Igori, Dasom Baek & Jae Sun Moon

  4. Department of Applied Biology, College of Agriculture and Life Sciences, Kangwon National University, Chunchon, 24341, Republic of Korea

    Jin-Sung Hong

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  1. Ran Hee Yoo
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Correspondence to Su-Heon Lee or Jae Sun Moon.

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This article does not contain any studies with animals or human participants performed by any of the authors.

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705_2017_3512_MOESM1_ESM.tif

Suppl. Table 1: Nucleotide and amino acid sequence identities of IxYMaV-2 relative to those of other species classified within the genus Umbravirus.(TIFF 28 kb)

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Yoo, R.H., Lee, SW., Lim, S. et al. Complete genome analysis of a novel umbravirus-polerovirus combination isolated from Ixeridium dentatum . Arch Virol 162, 3893–3897 (2017). https://doi.org/10.1007/s00705-017-3512-0

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  • DOI: https://doi.org/10.1007/s00705-017-3512-0

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