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Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland

Archives of Virology volume 162, pages 2041–2045 (2017)Cite this article

Abstract

The discovery and full-genome sequences of two isolates of a fourth capulavirus species are reported. The viruses were discovered during a viral metagenomics survey of uncultivated Plantago lanceolata plants in the Åland archipelago of south western Finland. The newly discovered viruses apparently produce no symptoms in P. lanceolata. They have a genome organization that is very similar to that of the three known capulavirus species and additionally share between 62.9 and 67.1% genome-wide sequence identity with the isolates of these species. It is therefore proposed that these viruses be assigned to a new capulavirus species named “Plantago lanceolata latent virus”.

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Acknowledgements

This work was supported by INRA, Département Santé des Plantes et Environnement (grant AAP SPE 2015) awarded to PR. DPM and AV are supported by the National Research Foundation of South Africa. PR is supported by EU grant FP7-PEOPLE-2013-IOF (N° PIOF-GA-2013-622571).

Author information

Authors and Affiliations

  1. Department of Biosciences, Metapopulation Research Centre, University of Helsinki, P.O. Box 65, 00014, Helsinki, Finland

    Hanna Susi & Anna-Liisa Laine

  2. CIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398, Montpellier Cedex-5, France

    Denis Filloux, Pauline Bernardo & Philippe Roumagnac

  3. School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand

    Simona Kraberger, Kata Farkas & Arvind Varsani

  4. Institute of Biotechnology, University of Helsinki, Helsinki, Finland

    Mikko J. Frilander

  5. Computational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, 7925, South Africa

    Darren P. Martin

  6. Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, 7701, South Africa

    Arvind Varsani

  7. The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life sciences, Arizona State University, Tempe, AZ, USA

    Arvind Varsani

Authors
  1. Hanna Susi
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  2. Anna-Liisa Laine
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  3. Denis Filloux
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  4. Simona Kraberger
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  5. Kata Farkas
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  6. Pauline Bernardo
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  7. Mikko J. Frilander
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  8. Darren P. Martin
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  9. Arvind Varsani
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  10. Philippe Roumagnac
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Corresponding author

Correspondence to Philippe Roumagnac.

Ethics declarations

This study was funded by INRA, Département Santé des Plantes et Environnement (grant AAP SPE 2015) awarded to PR.

Conflict of interest

Author DPM and AV have received research grants from the National Research Foundation of South Africa. Author PR has received an EU grant FP7-PEOPLE-2013-IOF (N° PIOF-GA-2013-622571). Author DPM, AV and PR declare that they have no conflict of interest.

Ethical approval

This article does not contain any studies with human participants or animals performed by any of the authors.

Additional information

GenBank Accession #: KT214389, KT214390.

Electronic supplementary material

Below is the link to the electronic supplementary material.

705_2017_3298_MOESM1_ESM.pdf

Supplementary Figure 1: Pairwise nucleotide sequence identity matrix of complete capulavirus genomes. (PDF 695 kb)

705_2017_3298_MOESM2_ESM.pdf

Supplementary Figure 2: Pairwise amino acid sequence identity matrix of capulavirus replication-associated proteins. (PDF 707 kb)

705_2017_3298_MOESM3_ESM.pdf

Supplementary Figure 3: Pairwise amino acid sequence identity matrix of capulavirus capsid proteins. (PDF 665 kb)

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Susi, H., Laine, AL., Filloux, D. et al. Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland. Arch Virol 162, 2041–2045 (2017). https://doi.org/10.1007/s00705-017-3298-0

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  • DOI: https://doi.org/10.1007/s00705-017-3298-0

Keywords

  • Roll Circle Amplification
  • Plantago Lanceolata
  • Approximate Likelihood Ratio Test
  • Roll Circle Amplification Product
  • Alfalfa Leaf