Skip to main content
Log in

Duplications in the 3′ termini of three segments of Fusarium graminearum virus China 9

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

The hypovirulence-inducing Fusarium graminearum virus China 9 (FgV-ch9) was described recently and is closely related to the Fusarium graminearum mycovirus-2 (FgV2). Both viruses share common properties of viruses belonging to the family Chrysoviridae. Re-sequencing of FgV-ch9 revealed duplications of the 3′ non-coding regions of segments 2 and 3. Both duplications are arranged in a head-to-tail array, are attached to the complete terminus, and do not affect the encoded gene. An internal duplication was found in segment 5. This duplication resulted in an increase in the size of the encoded protein. In silico analysis showed similar duplications in segments 2 and 3 of FgV2.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

Explore related subjects

Discover the latest articles and news from researchers in related subjects, suggested using machine learning.

References

  1. Arnold MM, Brownback CS, Taraporewala ZF, Patton JT (2012) Rotavirus variant replicates efficiently although encoding an aberrant NSP3 that fails to induce nuclear localization of poly(A)-binding protein. J Gen Virol 93:1483–1494. doi:10.1099/vir.0.041830-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Bryant JE, Vasconcelos PFC, Rijnbrand RCA, Mutebi JP, Higgs S, Barrett ADT (2005) Size heterogeneity in the 3′ noncoding region of South American isolates of Yellow fever virus. J Virol 79:3807–3821. doi:10.1128/JVI.79.6.3807-3821.2005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Castón JR, Ghabrial SA, Jiang D, Rivas G, Alfonso C, Roca R, Luque D, Carrascosa JL (2003) Three-dimensional structure of Penicillium chrysogenum virus: a double-stranded RNA virus with a genuine T=1 capsid. J Mol Biol. 331:417–431. doi:10.1016/S0022-2836(03)00695-8

    Article  PubMed  Google Scholar 

  4. Chu YM, Jeon JJ, Yea SJ, Kim YH, Yun SH, Lee YW, Kim KH (2002) Double-stranded RNA mycovirus from Fusarium graminearum. Appl Environ Microbiol 68:2529–2534. doi:10.1128/AEM.68.5.2529-2534.2002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Chu YM, Lim WS, Yea SJ, Cho JD, Lee YW, Kim KH (2004) Complexity of dsRNA mycovirus isolated from Fusarium graminearum. Virus Genes 28:135–143. doi:10.1023/B:VIRU.0000012270.67302.35

    Article  CAS  PubMed  Google Scholar 

  6. Darissa O, Willingmann P, Schäfer W, Adam G (2011) A novel double-stranded RNA mycovirus from Fusarium graminearum: nucleic acid sequence and genomic structure. Arch Virol 156:647–658. doi:10.1007/s00705-010-0904-9

    Article  CAS  PubMed  Google Scholar 

  7. Finerty PJ, Bass BL (1997) A Xenopus zinc finger protein that specifically binds dsRNA and RNA-DNA hybrids. J Mol Biol 271:195–208. doi:10.1006/jmbi.1997.1177

    Article  CAS  PubMed  Google Scholar 

  8. Gritsun TS, Gould EA (2006) The 3′ untranslated regions of Kamiti River virus and Cell fusing agent virus originated by self-duplication. J Gen Virol 87:2615–2619. doi:10.1099/vir.0.81950-0

    Article  CAS  PubMed  Google Scholar 

  9. Iakoucheva LM, Kimzey AL, Masselon CD, Smith RD, Dunker AK, Ackerman EJ (2001) Aberrant mobility phenomena of the DNA repair protein XPA. Protein Sci: A Publication of the Protein Society 10:1353–1362

    Article  CAS  Google Scholar 

  10. Iuchi S (2001) Three classes of C2H2 zinc finger proteins. Cell Mol Life Sci 58:625–635. doi:10.1007/PL00000885

    Article  CAS  PubMed  Google Scholar 

  11. Jiang D, Ghabrial SA (2004) Molecular characterization of Penicillium chrysogenum virus: reconsideration of the taxonomy of the genus Chrysovirus. J Gen Virol 85:2111–2121. doi:10.1099/vir.0.79842-0

    Article  CAS  PubMed  Google Scholar 

  12. Kamiuchi T, Abe E, Imanishi M, Kaji T, Nagaoka M, Sugiura Y (1998) Artificial nine zinc-finger peptide with 30 base pair binding sites. Biochemistry 37:13827–13834. doi:10.1021/bi9811112

    Article  CAS  PubMed  Google Scholar 

  13. Landeo-Ríos Y, Navas-Castillo J, Moriones E, Cañizares MC (2015) The p22 RNA silencing suppressor of the crinivirus Tomato chlorosis virus preferentially binds long dsRNAs preventing them from cleavage. Virology 488:129–136. doi:10.1016/j.virol.2015.11.008

    Article  PubMed  Google Scholar 

  14. Lukhovitskaya NI, Solovieva AD, Boddeti SK, Thaduri S, Solovyev AG, Savenkov EI (2013) An RNA virus-encoded zinc-finger protein acts as a plant transcription factor and induces a regulator of cell size and proliferation in two tobacco species. Plant Cell 25:960–973. doi:10.1105/tpc.112.106476

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Lukhovitskaya NI, Gushchin VA, Solovyev AG, Savenkov EI (2013) Making sense of nuclear localization: a zinc-finger protein encoded by a cytoplasmically replicating plant RNA virus acts as a transcription factor: a novel function for a member of large family of viral proteins. Plant Signal Behav 8:e25263

    Article  PubMed  PubMed Central  Google Scholar 

  16. Nagy PD, Bujarski JJ (1993) Targeting the site of RNA-RNA recombination in Brome mosaic virus with antisense sequences. PNAS 90:6390–6394

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Nagy PD, Simons AE (1997) New insights into the mechanisms of RNA recombination. Virology 235:1–9. doi:10.1006/viro.1997.8681

    Article  CAS  PubMed  Google Scholar 

  18. Raffo AJ, Dawson WO (1991) Construction of Tobacco mosaic virus subgenomic replicons that are replicated and spread systemically in tobacco plants. Virology 184:277–289. doi:10.1016/0042-6822(91)90844-2

    Article  CAS  PubMed  Google Scholar 

  19. Raju R, Subramarian SV, Hajjou M (1995) Genesis of Sindbis virus by in vivo recombination of nonreplicative RNA precursors. J Virol 69:7391–7401

    CAS  PubMed  PubMed Central  Google Scholar 

  20. Romaniuk PJ (1990) Characterization of the equilibrium binding of Xenopus transcription factor IIIA to the 5 S RNA gene. J Biol Chem 265:17593–17600

    CAS  PubMed  Google Scholar 

  21. Sun L, Suzuki N (2008) Intragenic rearrangements of a mycoreovirus induced by the multifunctional protein p29 encoded by the prototypic hypovirus CHV1-EP713. RNA 14:2557–2571. doi:10.1261/rna.1125408

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Tao YJ, Ye Q (2010) RNA virus replication complexes. PLos Pathogens 6 Vol 7, e1000943

  23. Yang M, May WS, Ito T (1999) JAZ requires the double stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem 274:27399–27406. doi:10.1074/jbc.274.39.27399

    Article  CAS  PubMed  Google Scholar 

  24. Yu J, Lee K-M, Kim K-H (2011) Molecular characterization of Fusarium graminearum virus 2 isolated from Fusarium graminearum strain 98-8-60. Plant Pathol J 27:285–290

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cornelia Heinze.

Ethics declarations

This study was funded by Grant Scha 559/6-1 from the Deutsche Forschungsgemeinschaft (DFG). Author Christine Blum was funded by the Grant Scha 559/6-1. All authors, Christine Blum, Stefanie Götsch and Cornelia Heinze, declare that they have no conflict of interest. This article does not contain any studies with human participants or animals performed by any of the authors.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 143 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Blum, C., Götsch, S. & Heinze, C. Duplications in the 3′ termini of three segments of Fusarium graminearum virus China 9. Arch Virol 162, 897–900 (2017). https://doi.org/10.1007/s00705-016-3174-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-016-3174-3

Keywords