Abstract
Groundnut ringspot virus (GRSV) and tomato chlorotic spot virus (TCSV) share biological and serological properties, so their identification is carried out by molecular methods. Their genomes consist of three segmented RNAs: L, M and S. The finding of a reassortant between these two viruses may complicate correct virus identification and requires the characterization of the complete genome. Therefore, we present for the first time the complete sequences of all the genes encoded by a GRSV isolate. The high level of sequence similarity between GRSV and TCSV (over 90 % identity) observed in the genes and proteins encoded in the M RNA support previous results indicating that these viruses probably have a common ancestor.

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Almeida MMS, Orílio AF, Melo FL, Rodriguez R, Feliz A, Cayetano X, Martínez RT, Resende RO (2014) The first report of tomato chlorotic spot virus (TCSV) infecting long beans and chili peppers in the dominican republic. Plant Dis 98:1285
Ananthakrishnan TN, Annadurai RS (2007) Thrips–tospovirus interactions: biological and molecular implications. Curr Sci 92:1083–1086
Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J (2011) ngs_backbone: a pipeline for read cleaning, mapping and snp calling using next generation sequence. BMC Genom 12:285
Boari AJ, Maciel-Zambolim E, Lau DD, Lima GSA, Kitajima EW, Brommonschenkel SH, Zerbini FM (2002) Detection and partial characterization of an isolate of groundnut ringspot virus in Solanum sessiliflorum. Fitopatol Bras 27:249–253
Briese T, Calisher CH, Higgs S (2013) Viruses of the family Bunyaviridae: are all available isolates reassortants? Virology 446:207–216
Hagen C, Frizzi A, Kao J, Jia L, Huang M, Zhang Y, Huang S (2011) Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses. Arch Virol 156:1209–1216
Hogenhout SA, Ammar E-D, Whitfield AE, Redinbaugh MG (2008) Insect vector interactions with persistently transmitted viruses. Annu Rev Phytopathol 46:327–359
Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R (2009) Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Virology 388:1–7
Law MD, Moyer JW (1990) A tomato spotted wilt-like virus with a serologically distinct N protein. J Gen Virol 71:933–938
Lewandowskia DJ, Adkins S (2005) The tubule-forming NSm protein from tomato spotted wilt virus complements cell-to-cell and long-distance movement of Tobacco mosaic virus hybrids. Virology 342:26–37
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth GT, Abecasis GR, Durbin R (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079
Lian S, Lee JS, Cho WK, Yu J, Kim MK, Choi HS, Kim KH (2013) Phylogeneticand recombination analysis of tomato spotted wilt virus. PLOS ONE 8:e63380. doi:10.1371/journal.pone.0063380
Londoño A, Capobianco H, Zhang S, Polston JE (2012) First record of tomato chlorotic spot virus in the USA. Trop Plant Pathol 37:333–338
Lovato FA, Nagata T, de Oliveira Resende R, de Avila AC, Inoue-Nagata AK (2004) Sequence analysis of the glycoproteins of tomato chlorotic spot virus and groundnut ringspot virus and comparison with other tospoviruses. Virus Genes 29:321–328
Margaria P, Ciuffo M, Rosa C, Turina M (2015) Evidence of a tomato spotted wilt virus resistance-breaking strain originated through natural reassortment between two evolutionary-distinct isolates. Virus Res 196:157–161
Milne I, Stephen G, Bayer M, Cock PJA, Pritchard L, Cardle L, Shaw PD, Marshall D (2013) Using tablet for visual exploration of second-generation sequencing data. Brief Bioinform 14:193–202
Pappu HR, Jones RAC, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236
Plyusnin A, Beaty BJ, Elliott RM, Goldbach R, Kormelink R, Lundkvist A, Schmaljohn CS, Tesh RB (2012) Family Bunyaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz (eds) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Elsevier Inc, London, pp 725–741
Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
Silva MS, Martins CRF, Bezerra IC, Nagata T, de Ávila AC, Resende RO (2001) Sequence diversity of NSm movement proteins of tospoviruses. Arch Virol 146:1267–1281
Sin SH, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of Tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173
Soellick T-R, Uhrig JF, Bucher GL, Kellmann J-W, Schreier PH (2000) The movement protein NSm of tomato spotted wilt topovirus (TSWV): RNA binding, interaction with the TSWV N protein, and identification of interacting proteins. Proc Natl Acad Sci USA 97:2373–2378
Sundaraj S, Srinivasan R, Culbreath AK, Riley DG, Pappu HR (2014) Host plant resistance against Tomato spotted wilt virus in peanut (Arachis hypogaea) and its impact on susceptibility to the virus, virus population genetics, and vector feeding behavior and survival. Phytopathology 104:202–210
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729
Tentchev D, Verdin E, Marchal C, Jacquet M, Aguilar JM, Moury B (2011) Evolution and structure of tomato spotted wilt virus populations: evidence of extensive reassortment and insights into emergence processes. J Gen Virol 92:961–973
Timmerman-Vaughan GM, Lister R, Cooper R, Tang J (2014) Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution. Arch Virol 159:993–1003
Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Van Regenmortel MHV (eds) Encyclopedia of virology, vol 5, 3rd edn. Elsevier Ltd, Oxford, pp 157–162
Webster CG, Reitz SR, Perry KL, Adkins S (2011) A natural M RNA reassortant arising from two species of plant- and insect-infecting bunyaviruses and comparison of its sequence and biological properties to parental species. Virology 413:216–225
Webster CG, Frantz G, Reitz SR, Funderburk JE, Mellinger HC, McAvoy E, Turechek WW, Marshall SH, Tantiwanich Y, McGrath MT, Daughtrey ML, Adkins S (2015) Emergence of groundnut ringspot virus and tomato chlorotic spot virus in vegetables in Florida and the Southeastern United States. Phytopatology 105:388–398
Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li W-X, Ding S-W (2010) Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc Natl Acad Sci USA 107:1606–1611
Zerbino DR, Birney E (2008) Velvet: algorithms for de novo read assembly using de Bruijn graphs. Genome Res 18:821–829
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This work was supported by Fundación Maní Argentino and the PNIND PE 1108072 project of Instituto Nacional de Tecnología Agropecuaria (INTA).
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de Breuil, S., Cañizares, J., Blanca, J.M. et al. Analysis of the coding-complete genomic sequence of groundnut ringspot virus suggests a common ancestor with tomato chlorotic spot virus. Arch Virol 161, 2311–2316 (2016). https://doi.org/10.1007/s00705-016-2912-x
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DOI: https://doi.org/10.1007/s00705-016-2912-x