Abstract
The genome of a potyvirus (isolate JaVT_FZ) recovered from jasmine (Jasminum sambac L.) showing yellow ringspot symptoms in Fuzhou, China, was sequenced. JaVT_FZ is closely related to seven other potyviruses with completely sequenced genomes, with which it shares 66-70 % nucleotide and 52-56 % amino acid sequence identity. However, the coat protein (CP) gene shares 82-92 % nucleotide and 90-97 % amino acid sequence identity with those of two partially sequenced potyviruses, named jasmine potyvirus T (JaVT-jasmine) and jasmine yellow mosaic potyvirus (JaYMV-India), respectively. This suggests that JaVT_FZ, JaVT-jasmine and JaYMV-India should be regarded as members of a single potyvirus species, for which the name “Jasmine virus T” has priority.
Similar content being viewed by others
References
Wikee S, Cai L, Pairin N, McKenzie EC, Su Y-Y, Chukeatirote E, Thi H, Bahkali A, Moslem M, Abdelsalam K, Hyde K (2011) Colletotrichum species from Jasmine (Jasminum sambac). Fungal Divers 46(1):171–182
Lin Y, Chen T, Chang C (2004) Characterization of a new potyvirus isolated from jasmine [Jasminum sambac (L). Ait] in Taiwan. Plant Pathol Bull 13:69–84
Kaur CKS, Snehi SK, Raj SK (2013) Molecular detection of jasmine potyvirus associated with yellow mosaic symptoms on Jasminum sambac L. in India. Chin J Integr Med 46(9):1102–1107
Sudheera Y, Vishnu Vardhan GP, Hema M, Krishna Reddy M, Sreenivasulu P (2014) Characterization of a potyvirus associated with yellow mosaic disease of jasmine (Jasminum sambac L.) in Andhra Pradesh, India. Virus Dis 25(3):394–397
Fillmer K, Adkins S, Pongam P, D’Elia T (2015) Complete genome sequence of tomato mosaic virus isolated from jasmine in the United States. Genome Announc 3(4):e00706–e00715
Goelet P, Lomonossoff GP, Butler PJ, Akam ME, Gait MJ, Karn J (1982) Nucleotide sequence of tobacco mosaic virus RNA. Proc Natl Acad Sci USA 79(19):5818–5822
Zhao F, Hwang U, Lim S, Yoo R, Igori D, Lee S-H, Lim H-S, Moon J (2015) Complete genome sequence and construction of infectious full-length cDNA clones of tobacco ringspot Nepovirus, a viral pathogen causing bud blight in soybean. Virus Genes 51(1):163–166
Wilson KI (1972) Chlorotic ring spot of jasmine. Indian Phytopathol 25:157–158
Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153(1):25–36
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol 61(3):539–542
Nylander JAA (2008) MrModeltest v2.3. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6(4):471–487
Chung BY, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105(15):5897–5902
King AM, Lefkowitz E, Adams MJ, Carstens EB (2011) Virus taxonomy, ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam
Acknowledgments
This work was supported by National Natural Science Foundation of China (grant no. 31201491), Doctoral Fund of Ministry of Education of China (grant no. 20123515120005), Natural Science Foundation of Fujian Province of China (grant no. 2014J06011), Education Department of Fujian Province Office Program (grant no. JA13092), and FAFU Science Fund for Distinguished Young Scholars (grant no. xjq201402). We thank Drs. Zhenguo Du, James L. Starr, H. Josef Vetten and three anonymous reviewers for comments and suggestions about the manuscript.
Author information
Authors and Affiliations
Corresponding author
Additional information
Y. Tang and F. Gao contributed equally to the work.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Tang, Y., Gao, F., Yang, Z. et al. Complete genome analysis of jasmine virus T from Jasminum sambac in China. Arch Virol 161, 2033–2036 (2016). https://doi.org/10.1007/s00705-016-2811-1
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00705-016-2811-1