Abstract
The complete genomic sequences of two isolates of pokeweed mosaic virus (PkMV) were determined to be 9512 nucleotides long, excluding the poly(A) tail. Their genomic organization is typical of potyviruses and contains conserved motifs found in members of the genus Potyvirus. Pairwise comparisons showed that PkMV and other members of the genus Potyvirus share 51.0-57.5 % sequence identity at the genome sequence level and 39.8-53.0 % at the polyprotein sequence level. Phylogenetic analysis indicated that PkMV is most closely related to several viruses in the PVY group of the genus Potyvirus. The genomic information obtained for PkMV suggests that this virus is a distinct potyvirus.
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References
Adams MJ, Antoniw JF, Beaudoin F (2005) Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol 6:471–487
Adams MJ, Zerbini FM, French R, Rabenstein F, Stenger DC, Valkonen JPT (2011) Family potyviridae. In: King AMQ, Lefkowitz E, Adams MJ, Carstens EB (eds) Virus taxonomy, 9th report of the international committee for taxonomy of viruses. Elsevier Academic Press, San Diego, USA, pp 1069–1089
Allard HA (1918) The mosaic disease of Phytolacca decandra. Phytopathology 8:51–54
Chen J, Chen J, Adams MJ (2001) A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Arch Virol 146:757–7664
Chung BY-W, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci USA 105:5897–5902
Gibbs A, Ohshima K (2010) Potyviruses and the digital revolution. Ann Rev Phytopathol 48:205–223
Gotz R, Maiss E (2002) The complete sequence of the genome of Cocksfoot streak virus (CSV), a grass infecting Potyvirus. Arch Virol 147:1573–1583
Ha C, Coombs S, Revill PA, Harding RM, Vu M, Dale JL (2008) Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses. Arch Virol 153:25–36
Kadare G, Haenni AL (1997) Virus-encoded RNA helicases. J Virol 71:2583–2590
Kim KS, Fulton JP (1969) Electron microscopy of pokeweed leaf cells infected with pokeweed mosaic virus. Virology 37:297–308
Koonin EV (1991) The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol 72:2197–2206
Li R, Mock R, Huang Q, Abad J, Hartung J, Kinard G (2008) A reliable and inexpensive method of nucleic acid extraction for the PCR-based detection of diverse plant pathogens. J Virol Methods 154:48–55
Lütcke HA, Chow KC, Mickel FS, Moss KA, Kern HF, Scheele GA (1987) Selection of AUG initiation codons differs in plants and animals. EMBO J 6:43–48
Mitich LW (1994) Common pokeweed. Weed Technol 8:887–890
Shepherd RJ, Fulton JP, Wakeman RJ (1969) Properties of a virus causing pokeweed mosaic. Phytopathology 59:219–222
Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175
Woods AF (1902) Observations on the mosaic disease of tobacco, vol 18. USDA Bureau of Plant Industry Bulletin, Washington
Yamaji Y, Lu X, Kagiwada S, Oshima K, Namba S (2001) Molecular evidence that a lily-infecting strain of Tulip breaking virus from Japan is a strain of Lily mottle virus. Eur J Plant Pathol 107:833–837
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We thank Whitney Hymes for excellent technical assistance.
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Xu, D., Wang, M., Kinard, G. et al. Complete genome sequence of two isolates of pokeweed mosaic virus and its relationship to other members of the genus Potyvirus . Arch Virol 157, 2023–2026 (2012). https://doi.org/10.1007/s00705-012-1329-4
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DOI: https://doi.org/10.1007/s00705-012-1329-4