Abstract
The complete nucleotide sequence of the Phleum isolate of cocksfoot mild mosaic virus (CMMV-P) and the coat protein sequence of the cocksfoot isolate (CMMV-1) were determined. Comparative sequence analysis revealed a close relationship with Panicum mosaic virus (PMV; genus Panicovirus), and together with serological studies, the work supports the classification of CMMV in the family Tombusviridae, genus Panicovirus rather than, as is currently proposed, the genus Sobemovirus. A full-length cDNA clone was prepared, and RNA transcripts synthesised from cDNA were shown to be infectious when inoculated to Hordeum vulgare.
References
Batten JS, Desvoyes B, Yamamura Y, Scholthof KB (2006) A translational enhancer element on the 3′-proximal end of the Panicum mosaic virus genome. FEBS Lett 580:2591–2597
Batten JS, Turina M, Scholthof KB (2006) Panicovirus accumulation is governed by two membrane-associated proteins with a newly identified conserved motif that contributes to pathogenicity. Virology J 3:12–23
Buck KW (1996) Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv Virus Res 47:159–251
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 36 (web server issue):W465–469 (Epub 2008 Apr 19)
Dolja VD, Koonin EV (1991) Phylogeny of capsid proteins of small icosahedral RNA plant viruses. J Gen Virol 72:1481–1486
Guy PL (2006) New Zealand grasslands revisited: identification of Cocksfoot mild mosaic virus. Australas Plant Path 35:461–464
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Hann SR, Dixit M, Sears RC, Sealy L (1994) The alternatively initiated c-myc proteins differentially regulate transcription through a non-canonical DNA-binding site. Gene Dev 8:2441–2452
Hull R (1977) The grouping of small spherical plant viruses with single RNA components. J Gen Virol 36:289–295
Hull R, Fauquet CM, Gergerich RC, Lommel SA, Thottapilly G (2000) Genus Sobemovirus. In:Van Regenmortel MHV (ed) Virus taxonomy, seventh report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego
Koonin EV (1991) The phylogeny of RNA-dependent RNA-polymerases of positive-strand RNA viruses. J Gen Virol 72:2197–2206
Kozak M (1989) The scanning model for translation: an update. J Cell Biol 108:229–241
Kozak M (1989) Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol Cell Biol 9:5073–5080
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105–132
Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Lommel SA, Martelli GP, Russo M (2000) Family Tombusviridae. In: Van Regenmortel MHV (ed) Virus taxonomy, seventh report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego
Mäkinen K, Tamm T, Næss V, Truve E, Puurand Ü, Munthe T, Saarma M (1995) Characterization of cocksfoot mottle sobemovirus genomic RNA and sequence comparison with related viruses. J Gen Virol 76:2817–2825
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen RA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, Bryant SH (2003) CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res 31:383–387
Mayo MA, Reddy DVR (1985) Translation products of RNA from Indian peanut clump virus. J Gen Virol 66:1347–1351
Mayo MA, Robinson DJ, Jolly CA, Hyman L (1989) Nucleotide sequence of potato leafroll luteovirus RNA. J Gen Virol 70:1037–1051
Nutter RC, Scheets K, Panganiban LC, Lommel SA (1989) The complete nucleotide sequence of maize chlorotic mottle virus. Nucleic Acids Res 17:3163–3177
Paul HL, Querfurth G, Huth W (1980) Serological studies on the relationships of some isometric viruses of Gramineae. J Gen Virol 47:67–77
Riechmann JL, Ito T, Meyerowitz EM (1999) Non-ATG initiation of AGAMOUS mRNA translation in Arabidopsis thaliana. Mol Cell Biol 19:8505–8512
Scheets K (2000) Maize chlorotic mottle machlomovirus expresses its coat protein from a 1.47 kb subgenomic RNA and makes a 0.34 kb subgenomic RNA. Virology 267:90–101
Torrance L (1992) Serological methods to detect plant viruses: production and use of monoclonal antibodies. In: Duncan JM, Torrance L (eds) Techniques for the rapid detection of plant pathogens. Blackwell, Oxford
Torrance L, Harrison BD (1981) Properties of Scottish isolates of cocksfoot mild mosaic virus and their comparison with others. Ann Appl Biol 97:285–295
Turina M, Desvoyes B, Scholthof KB (2000) A gene cluster encoded by Panicum mosaic virus is associated with virus movement. Virology 266:120–128
Turina M, Maruoka M, Monis J, Jackson AO, Scholthof KB (1998) Nucleotide sequence and infectivity of a full-length cDNA clone of Panicum mosaic virus. Virology 241:141–155
Wu S, Rinehart CA, Kaesberg P (1987) Sequence and organization of southern bean mosaic virus genomic RNA. Virology 161:73–80
Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415
Acknowledgments
We thank Professor Karen-Beth Scholthof for providing samples of Panicum mosaic virus and antiserum, Dr. W. Huth for providing samples of CMMV-1, and Karen Jackson for technical assistance. SCRI receives funding from the Scottish Government Research, Analysis and Rural Affairs Department.
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The GenBank accession number of the sequence reported in this paper is EU081018.
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Ziegler, A., Cowan, G. & Torrance, L. Comparative sequence analysis and serological and infectivity studies indicate that cocksfoot mild mosaic virus is a member of the genus Panicovirus . Arch Virol 154, 1545–1549 (2009). https://doi.org/10.1007/s00705-009-0468-8
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DOI: https://doi.org/10.1007/s00705-009-0468-8