Cells lines
293T and COS cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco-BRL). HeLa cells were maintained in minimal essential medium (Gibco). In all cases, the culture medium was supplemented with 10% fetal bovine serum (FBS) (Hyclone, UT), 100 μg/ml streptomycin and 100 unit/ml penicillin.
Sequence comparison of HA and construction of HA mutants
In order to identify mutations of HA that are located near the receptor-binding domain and observed in both avian and human natural isolates, the sequence encoding the entire HA gene from A/chicken/Fujian/1042/2005 was used as wild type (Wt) and compared with isolates identified in both poultry and humans in mainland China, Hong Kong, Thailand, and Vietnam during outbreaks between 1996 and 2005. Viral RNA of A/chicken/Fujian/1042/2005 (H5N1) was extracted from allantoic fluids using the RNeasy RNA extraction kit (Qiagen, Chatsworth, CA) according to manufacturer’s protocol. The H1 HA was amplified from the cDNA of A/WSN/33(H1N1) and inserted between the XhoIand Not I sites of the pCI-neo vector (Promega) to generate pCI- HA (Hu). The H5 HA and neuraminidase (NA) genes were amplified by reverse transcriptase polymerase chain reaction (RT-PCR) from viral RNA according to a previously described method [11]. Amplified full-length viral HA, NA and ion channel protein M2 cDNA were inserted between the Xho I and Not I sites of the pCI-neo vector to generate pCI-HA (Wt), pCI-NA and pCI-M2. Mutants were generated, using pCI-HA as a template, by site-directed mutagenesis with the QuikChange mutagenesis kit (Stratagene) and verified by DNA sequencing.
Hemadsorption assay for HA receptor-binding activity
For detecting the receptor-binding specificity of these HA mutants, hemadsorption was performed with erythrocytes from different species that vary in the types of SA they display. HeLa cells (~3×105 cells in a 35-mm-diameter plate) were transfected with 2 μg purified pCI-HA and 2 μg pCI-NA plasmids plus 0.25 μg pCI-M2 (which was co-expressed with HA to support HA transport). After a 40-h incubation at 37°C, the medium was removed. Cells were washed twice with PBS, treated with Vibrio cholerae sialidase (5.5 mU/ml, Roche) for 1 h at 37°C, washed twice again, and incubated respectively with chilled 0.5% horse or guinea pig erythrocyte suspensions in PBS for 1 h at 4°C. The cells were washed five times with PBS, adsorbed erythrocytes were disrupted with distilled water, and the concentration of hemoglobin in the lysate was evaluated by measuring the absorbance at 540 nm.
To determine whether mutations made in the HA affected the level of expression of the proteins on the cell surface, surface expression of HA was determined in parallel with the hemadsorption assay on HeLa cells. Briefly, HeLa cells (~3×105 cells in a 35-mm-diameter plate) were transfected with 2 μg of pCI-HA or its mutant plasmids. Forty hours after transfection, cells were washed with PBS and incubated for 30 min at 4°C with anti-H5 chicken serum at 1:1,000 dilutions. The cells were then washed once with PBS and incubated for 30 min at 4°C with fluorescein-labeled goat anti-chicken immunoglobulin antibodies (Sigma, St Louis, MI) at 1:200 dilutions. After two washes, cells were analyzed on a FACSSCAN (FACScan, Becton Dickinson, Heidelberg, Germany).
Polykaryon formation assay
A polykaryon formation assay was performed to investigate whether HA mutations had any influence on the efficiency of HA-directed fusion. We used HeLa cells for the polykaryon formation assay because they possess both the SA < alpha > 2,3 Gal and SA < alpha > 2,6 Gal receptors, which are important for both avian and human influenza virus infection. On the other hand, it was easy for us to observe and count polykaryon formation using HeLa cells. The capacity of HeLa cells transfected with HA expression plasmid to fuse together to form polykaryons was assayed as described previously [7]. HeLa cells (~3×105 cells per well; six-well plate) were transfected with 2 μg of pCI-HA plasmid or its mutant plasmids. Two days after transfection, cells were washed and incubated for 2 min at 37°C with fusion buffer (10 mM HEPES, 10 mM MES in PBS, pH 5.0) and then incubated for another 6 h at 37°C with complete medium to allow the formation of polykaryons. The cells were then fixed and stained with crystal violet, and polykaryons were counted in five randomly chosen fields. To determine whether mutations made in the HA affected the level of expression of the proteins on the cell surface, surface expression of HA was determined in parallel with the polykaryon formation assay on HeLa cells.
Production and quantification of HIV-like particle release
These pseudotyped viruses were constructed by incorporating HA mutants and NA into the HIV-luciferase vector, pNL43LucE−R− (HIV-luc) [3], which encodes all of the HIV gene products except Env and Nef (a generous gift from Dr. Hongkui Deng). Pseudovirus HA-HIV-luc was produced by transient transfection of 1 μg each of pCI-HA and pCI-NA envelope expression plasmid plus 1 μg pNL43-luc-E−R− plasmid on 293T cells using the calcium phosphate precipitation method [19]. Forty-eight hours after transfection, the culture supernatants were harvested and filtered through a 0.45-μm filter (Millipore, Watford, UK), and aliquots were stored at −80°C. One milliliter of filtered viral supernatant was further purified by centrifugation through 400 μl of 20% sucrose at 14,000 rpm for 30 min at 4°C.
The resulting pellet was resuspended in 2 × loading buffer, and the sample was split into two and subjected to SDS-PAGE. For the detection of HA proteins, one blot was probed with a chicken anti-HA polyclonal antibody (purchased from the Veterinary Institute of Harbing, China) at a dilution of 1:500, and horseradish peroxidase-labeled goat anti-chicken IgG (Sigma) was used as secondary antibody at a dilution of 1:1,000. For detection of the HIV p24 protein, the second blot was incubated with mouse anti-p24 monlclonal antibody (purchased from Wandayin Biotech, BJ) at 1:1,000 dilution followed by HRP-conjugated goat anti-mouse IgG as the secondary antibody (1:10,000) (Wandayin Biotech). Blots were developed with the enhanced chemiluminescence reagent (Amersham, Arlington Heights, IL) according to the manufacturer’s instructions.
Next, the amount of HA on HIV-like particles released into the culture supernatants was quantified by HA antigen capture ELISA. In brief, 96-well polyvinyl choride microplates (Costar) were coated with 1:200 diluted chicken anti-H5 polyclonal antibody (purchased from the Veterinary Institute of Harbing, China) at 4°C overnight (100 μl/well), and washed with washing buffer (0.1% Tween20 in PBS). The HIV-like particles, diluted with phosphate-buffered saline (PBS), were adsorbed to the wells of an antibody-coated plate (100 μl/well) at 37°C for 1 h. After unbound particles were removed with washing buffer, anti-HA monoclonal antibody (kindly provided by Wenbo Liu) at 1:3,000 dilution were added to the plate (100 μl/well) and incubated at 37°C for 1 h. After washing with washing buffer, a horseradish-peroxidase-labeled goat anti-mouse IgG (Sigma) was used as secondary antibody at a dilution of 1:20,000 (100 μl/well), followed by 1 h incubation at 37°C for 1 h. After washing, the amount of labeled pseudovirus was quantified by evaluating the perodoxidase activity present in the wells by using the standard o-phenylenediamine substrate. The amount of HA in the cell culture supernatant was calculated according to the HA antigen standard (purchased from the Veterinary Institute of Harbing, China).
Transduction by pseudotyped HA-HIV virus on 293T and COS cells
To investigate the effects of these HA mutants on virus entry into cells, pseudotyped virus carrying these mutants was used to transduce two different mammalian cell lines (293T or COS cells). The entry of these HA mutants was assessed by measuring the luciferase activity of the pseudotyped virus HIV-HA on live cells. Sub-confluent 293T or COS cells (in 24-well plates) at a density of 2 × 104 per well were transduced with an equal amount of pseudotyped virus (0.5 HA units). Inoculum of pseudoparticles in serum-free DMEM was added to the well and cells were incubated for 6 h at 37°C before addition of regular serum-containing medium. Two days after transduction, the cells were lysed, and the luciferase activity in 20 μl lysate was assayed in a TD-20/20 luminometer (Promega) using commercially available reagents (Promega).
Lectin staining
For the detection of the relative amounts of SAα2,3Gal and SAα2,6Gal moieties on the surface on three different cells lines, cells were analyzed using linkage-specific lectins (Glycan Differentiation Kit, Roche). Briefly, cultured 293T, COS or HeLa cells were resuspended and washed twice in PBS and once with buffer 1 (50 mM Tris–HCl, 0.15 M NaCl, 1 mM MgCl2, 1 mM MnCl2, 1 mM CaCl2 A). Then, the cells were incubated at 4°C for 1 h with 0.1 mg/ml digoxigenin (DIG)-labeled Sambucus nigra agglutinin (SNA), which specifically binds to the SAα2,6Gal/GalNAc moiety, or with 0.5 mg/ml DIG-labeled Maackia amurensis agglutinin (MAA), which specifically binds to the SAα2,3Gal/GalNAc moiety. After washing with PBS, the cells were incubated with fluorescein-conjugated anti-DIG antibodies (Roche) at 1:500 dilution, then washed and analyzed for fluorescene intensity.