Abacá bunchy top virus, a new member of the genus Babuvirus (family Nanoviridae)

Archives of Virology volume 153, pages135–147(2008)Cite this article

Summary

Two isolates of a novel babuvirus causing “bunchy top” symptoms were characterised, one from abacá (Musa textilis) from the Philippines and one from banana (Musa sp.) from Sarawak (Malaysia). The name abacá bunchy top virus (ABTV) is proposed. Both isolates have a genome of six circular DNA components, each ca. 1.0–1.1 kb, analogous to those of isolates of Banana bunchy top virus (BBTV). However, unlike BBTV, both ABTV isolates lack an internal ORF in DNA-R, and the ORF in DNA-U3 found in some BBTV isolates is also absent. In all phylogenetic analyses of nanovirid isolates, ABTV and BBTV fall in the same clade, but on separate branches. However, ABTV and BBTV isolates shared only 79–81% amino acid sequence identity for the putative coat protein and 54–76% overall nucleotide sequence identity across all components. Stem-loop and major common regions were present in ABTV, but there was less than 60% identity with the major common region of BBTV. ABTV and BBTV were also shown to be serologically distinct, with only two out of ten BBTV-specific monoclonal antibodies reacting with ABTV. The two ABTV isolates may represent distinct strains of the species as they are less closely related to each other than are isolates of the two geographic subgroups (Asian and South Pacific) of BBTV.

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References

  1. PR Beetham GJ Hafner RM Harding JL Dale (1997) ArticleTitleTwo mRNAs are transcribed from banana bunchy top virus DNA-1 J Gen Virol 78 229–236 Occurrence Handle9010308 Occurrence Handle1:CAS:528:DyaK2sXmsl2gsg%3D%3D

    PubMed  CAS  Google Scholar 

  2. PR Beetham RM Harding JL Dale (1999) ArticleTitleBanana bunchy top virus DNA-2 to 6 are monocistronic Arch Virol 144 89–105 Occurrence Handle10076511 Occurrence Handle10.1007/s007050050487 Occurrence Handle1:CAS:528:DyaK1MXhsFSmsrc%3D

    PubMed  Article  CAS  Google Scholar 

  3. KE Bell JL Dale CV Ha MT Vu PA Revill (2002) ArticleTitleCharacterisation of Rep-encoding components associated with banana bunchy top nanovirus in Vietnam Arch Virol 147 695–707 Occurrence Handle12038681 Occurrence Handle10.1007/s007050200019 Occurrence Handle1:CAS:528:DC%2BD38XktVGitLw%3D

    PubMed  Article  CAS  Google Scholar 

  4. TM Burns RM Harding JL Dale (1995) ArticleTitleThe genome organization of banana bunchy top virus: analysis of six ssDNA components J Gen Virol 76 1471–1482 Occurrence Handle7782775 Occurrence Handle1:CAS:528:DyaK2MXmtFelsb0%3D

    PubMed  CAS  Google Scholar 

  5. BS Castillo AL Martinez (1961) ArticleTitleOccurrence of bunchy top disease of banana in the Philippines FAO Plant Prot Bull 9 74–75

    Google Scholar 

  6. MF Clark AN Adams (1977) ArticleTitleCharacteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses J Gen Virol 34 475–483 Occurrence Handle323416 Occurrence Handle1:STN:280:CSiC28jhsVM%3D Occurrence Handle10.1099/0022-1317-34-3-475

    PubMed  CAS  Article  Google Scholar 

  7. FAOSTAT (2002) FAOSTAT Agricultural data. http://apps.fao.org/page/collections?subset=agriculture, vol 2002

  8. J Futterer I Potrykus Y Bao L Liu TM Burns R Hull T Hohn (1996) ArticleTitlePosition-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation J Virol 70 2999–3010 Occurrence Handle8627776 Occurrence Handle1:STN:280:BymC1cnnt1M%3D

    PubMed  CAS  Google Scholar 

  9. RM Harding TM Burns G Hafner RG Dietzgen JL Dale (1993) ArticleTitleNucleotide sequence of one component of the banana bunchy top virus genome contains the putative replicase gene J Gen Virol 74 323–328 Occurrence Handle8445361 Occurrence Handle1:CAS:528:DyaK3sXisVyqur4%3D

    PubMed  CAS  Google Scholar 

  10. VA Herrera-Valencia B Dugdale RM Harding JL Dale (2006) ArticleTitleAn iterated sequence in the genome of Banana bunchy top virus is essential for efficient replication J Gen Virol 87 3409–3412 Occurrence Handle17030877 Occurrence Handle10.1099/vir.0.82166-0 Occurrence Handle1:CAS:528:DC%2BD28XhtFGhsbbE

    PubMed  Article  CAS  Google Scholar 

  11. CL Horser M Karan RM Harding JL Dale (2001) ArticleTitleAdditional Rep-encoding DNAs associated with banana bunchy top virus Arch Virol 146 71–86 Occurrence Handle11266219 Occurrence Handle10.1007/s007050170192 Occurrence Handle1:CAS:528:DC%2BD3MXit1Oiu7Y%3D

    PubMed  Article  CAS  Google Scholar 

  12. J-M Hu H-C Fu C-H Lin H-J Su H-H Yeh (2007) ArticleTitleReassortment and concerted evolution in banana bunchy top virus genomes J Virol 81 1746–1761 Occurrence Handle17135318 Occurrence Handle10.1128/JVI.01390-06 Occurrence Handle1:CAS:528:DC%2BD2sXhslKjsL4%3D

    PubMed  Article  CAS  Google Scholar 

  13. M Karan RM Harding JL Dale (1994) ArticleTitleEvidence for two groups of banana bunchy top virus isolates J Gen Virol 75 3541–3546 Occurrence Handle7996145 Occurrence Handle1:CAS:528:DyaK2MXisFKgs7o%3D

    PubMed  CAS  Google Scholar 

  14. Karan M, Harding RM, Dale JL (1997) Association of banana bunchy top virus DNA components 2 to 6 with banana bunchy top disease. Mol Plant Pathol Online http://www.bspp.org.uk/mppol/1997/ 0624karan: 1–16

  15. L Katul T Timchenko B Gronenborn HJ Vetten (1998) ArticleTitleTen distinct circular ssDNA components, four of which encode putative replication-associated proteins, are associated with the faba bean necrotic yellows virus genome J Gen Virol 79 3101–3109 Occurrence Handle9880028 Occurrence Handle1:CAS:528:DyaK1cXotVaqurk%3D

    PubMed  CAS  Google Scholar 

  16. S Kumar K Tamura M Nei (2004) ArticleTitleMEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150–163 Occurrence Handle15260895 Occurrence Handle10.1093/bib/5.2.150 Occurrence Handle1:CAS:528:DC%2BD2cXntFGqu7s%3D

    PubMed  Article  CAS  Google Scholar 

  17. J Laufs I Jupin C David S Schumacher F Heyraud-Nitschke B Gronenborn (1995) ArticleTitleGeminivirus replication: genetic and biochemical characterization of Rep protein function, a review Biochimie 77 765–773 Occurrence Handle8824773 Occurrence Handle10.1016/0300-9084(96)88194-6 Occurrence Handle1:CAS:528:DyaK28Xnt1Cntw%3D%3D

    PubMed  Article  CAS  Google Scholar 

  18. SG Lazarowitz (1992) ArticleTitleGeminiviruses: genome structure and gene function Crit Rev Plant Sci 11 327–349 Occurrence Handle10.1080/713608038 Occurrence Handle1:CAS:528:DyaK3sXktVCntLY%3D

    Article  CAS  Google Scholar 

  19. CJ Magee (1953) ArticleTitleSome aspects of the bunchy top disease of banana and other Musa spp J Proc R Soc New South Wales 87 3–18

    Google Scholar 

  20. CJP Magee (1927) Investigation on the bunchy top disease of the banana Council for Scientific and Industrial Research Melbourne

    Google Scholar 

  21. GO Ocfemia (1926) ArticleTitleProgress report on bunchy-top of abaca or manila hemp Phytopathology 16 894

    Google Scholar 

  22. GO Ocfemia (1927) ArticleTitleSecond progress report on bunchy-top of abacá, or manila hemp Phytopathology 17 255–257

    Google Scholar 

  23. GO Ocfemia (1930) ArticleTitleBunchy-top of abacá or manila hemp I. A study of the cause of the disease and its method of transmission Am J Bot 17 1–18 Occurrence Handle10.2307/2446376

    Article  Google Scholar 

  24. GO Ocfemia (1931) ArticleTitleThe bunchy-top of abacá and its control Philippine Agriculturist 20 328–340

    Google Scholar 

  25. GO Ocfemia GG Buhay (1934) ArticleTitleBunchy-top of abacá, or Manila hemp: II. Further studies on the transmission of the disease and a trial planting of abacá seedlings in a bunchy-top devastated field Philippine Agriculturist 22 267–280

    Google Scholar 

  26. WR Pearson DJ Lipman (1988) ArticleTitleImproved tools for biological sequence comparison Proc Natl Acad Sci USA 85 2444–2448 Occurrence Handle3162770 Occurrence Handle10.1073/pnas.85.8.2444 Occurrence Handle1:CAS:528:DyaL1cXktFyit78%3D

    PubMed  Article  CAS  Google Scholar 

  27. AD Raymundo (2000) ArticleTitleSaving abaca from the onslaught of the bunchy-top disease Philippine Agricultural Scientist 83 379–385

    Google Scholar 

  28. Raymundo AD, Bajet NB (2000) Epidemiology and integrated management of abaca bunchy top in the Philippines. In: Molina A, Roa V, Bay-Petersen J, Carpio A, Joven J (eds) Managing banana and citrus diseases. Proceedings of a regional workshop on disease management of banana and citrus through the use of disease free planting materials, held in Davao City, Philippines, 14–16 October 1998. International Network for the Improvement of Banana and Plantain, Los Baños, pp 89–97

  29. AD Raymundo NB Bajet AC Sumalde BP Cipriano R Borromeo BS Garcia P Tapalla N Fabellar (2001) ArticleTitleMapping the spread of abaca bunchy-top and mosaic diseases in the Bicol and Eastern Visayas Regions, Philippines Philippine Agricultural Scientist 84 352–361

    Google Scholar 

  30. Y Sano M Wada Y Hashimoto T Matsumoto M Kojima (1998) ArticleTitleSequences of ten circular ssDNA components associated with the milk vetch dwarf virus genome J Gen Virol 79 3111–3118 Occurrence Handle9880029 Occurrence Handle1:CAS:528:DyaK1cXotVaqurY%3D

    PubMed  CAS  Google Scholar 

  31. M Sharman JE Thomas RG Dietzgen (2000) ArticleTitleDevelopment of a multiplex immunocapture PCR with colourimetric detection for viruses of banana J Virol Methods 89 75–88 Occurrence Handle10996641 Occurrence Handle10.1016/S0166-0934(00)00204-4 Occurrence Handle1:CAS:528:DC%2BD3cXms1Wlu7Y%3D

    PubMed  Article  CAS  Google Scholar 

  32. H-J Su L-Y Tsao M-L Wu T-H Hung (2003) ArticleTitleBiological and molecular categorization of strains of Banana bunchy top virus J Phytopathol 151 290–296 Occurrence Handle1:CAS:528:DC%2BD3sXlsFelsLw%3D

    CAS  Google Scholar 

  33. Thomas JE (1991) Virus indexing procedures for banana in Australia. In: Valmayor RV, Umali BE, Bejosano CP (eds) Banana diseases in Asia and the Pacific. International Network for the Improvement of Banana and Plantain, Montpellier, ASPNET Book Series, France, pp 144–155

  34. JE Thomas RG Dietzgen (1991) ArticleTitlePurification, characterization and serological detection of virus-like particles associated with banana bunchy top disease in Australia J Gen Virol 72 217–224 Occurrence Handle1993863 Occurrence Handle1:CAS:528:DyaK3MXhtl2ntbc%3D

    PubMed  CAS  Google Scholar 

  35. JE Thomas ADW Geering CF Gambley AF Kessling M White (1997) ArticleTitlePurification, properties and diagnosis of banana bract mosaic potyvirus and its distinction from abacá mosaic potyvirus Phytopathology 87 698–705 Occurrence Handle10.1094/PHYTO.1997.87.7.698

    Article  Google Scholar 

  36. JE Thomas ML Iskra-Caruana (2000) Bunchy top DR Jones (Eds) Diseases of banana, abacá and enset CABI Publishing Wallingford 241–253

    Google Scholar 

  37. D Thompson RG Dietzgen (1995) ArticleTitleDetection of DNA and RNA plant viruses by PCR and RT-PCR using a rapid virus release protocol without tissue homogenisation J Virol Methods 54 85–95 Occurrence Handle10.1016/0166-0934(95)00022-M

    Article  Google Scholar 

  38. Vetten HJ, Chu PWG, Dale JL, Harding R, Hu J, Katul L, Kojima M, Randles JW, Sano Y, Thomas JE (2004) Nanoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy. VIIIth Report of the ICTV. Elsevier/Academic Press, London, pp 343–352

  39. R Wanitchakorn GJ Hafner RM Harding JL Dale (2000) ArticleTitleFunctional analysis of proteins encoded by banana bunchy top virus DNA-4 to -6 J Gen Virol 81 299–306 Occurrence Handle10640570 Occurrence Handle1:CAS:528:DC%2BD3cXjvVOjtQ%3D%3D

    PubMed  CAS  Google Scholar 

  40. R Wanitchakorn RM Harding JL Dale (2000) ArticleTitleSequence variability in the coat protein gene of two groups of banana bunchy top isolates Arch Virol 145 593–602 Occurrence Handle10795525 Occurrence Handle10.1007/s007050050049 Occurrence Handle1:CAS:528:DC%2BD3cXivVaqsbg%3D

    PubMed  Article  CAS  Google Scholar 

  41. RY Wu HJ Su (1990) ArticleTitleProduction of monoclonal antibodies against banana bunchy top virus and their use in enzyme-linked immunosorbent assay J Phytopathol 128 203–208 Occurrence Handle1:CAS:528:DyaK3cXkvFChtL4%3D

    CAS  Google Scholar 

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Affiliations

  1. Department of Primary Industries and Fisheries, Horticulture and Forestry Science, Indooroopilly, Qld, Australia

    M. Sharman & J. E. Thomas

  2. Department of Primary Industries and Fisheries, Molecular Biosciences Technologies, Qld Biosciences Precinct, University of Queensland, Brisbane, Australia

    S. Skabo & T. A. Holton

Authors
  1. M. Sharman
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  2. J. E. Thomas
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  3. S. Skabo
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  4. T. A. Holton
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Correspondence to J. E. Thomas.

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Correspondence: Dr. John Thomas, Department of Primary Industries and Fisheries, Horticulture and Forestry Science, 80 Meiers Road, Plant Pathology Building, Indooroopilly, Qld 4068, Australia

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Sharman, M., Thomas, J., Skabo, S. et al. Abacá bunchy top virus, a new member of the genus Babuvirus (family Nanoviridae). Arch Virol 153, 135–147 (2008). https://doi.org/10.1007/s00705-007-1077-z

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Keywords

  • Rice Tungro Bacilliform Virus
  • Internal Stop Codon
  • Total Nucleic Acid Extract
  • Faba Bean Necrotic Yellow Virus
  • Manila Hemp