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Sobemoviruses possess a common CfMV-like genomic organization

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Summary.

Based on structural differences in the ORF2 region, the sobemoviruses have been subdivided into southern cowpea mosaic virus (SCPMV)-like and cocksfoot mottle virus (CfMV)-like types of genome organization. However, nearly identical amino acid sequences are encoded by these subgroups in different reading frames of ORF2, suggesting that insertion or deletion of appropriate nucleotides could restore similar genomic organizations for these viruses. We resequenced the regions of inconsistency for isolates of four SCPMV-like viruses: lucerne transient streak virus, ryegrass mottle virus, southern bean mosaic virus, and SCPMV. A comparison of nucleic acid composition of these sequences with previously published ones revealed crucial differences that established a common CfMV-like genomic organization for these sobemoviruses.

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Abbreviations

ORF:

open reading frame

VPg:

viral genome-linked protein

Pro:

protease

RdRp:

RNA-dependent RNA polymerase

SCPMV:

southern cowpea mosaic virus

CfMV:

cocksfoot mottle virus

SBMV:

southern bean mosaic virus

LTSV:

lucerne transient streak virus

RGMoV:

ryegrass mottle virus

SeMV:

sesbania mosaic virus

RYMV:

rice yellow mottle virus

SCMoV:

subterranean clover mottle virus

TRoV:

turnip rosette virus

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Authors and Affiliations

  1. Department of Gene Technology, Tallinn University of Technology, Tallinn, Estonia

    M. Meier & E. Truve

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  1. M. Meier
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  2. E. Truve
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Meier, M., Truve, E. Sobemoviruses possess a common CfMV-like genomic organization. Arch Virol 152, 635–640 (2007). https://doi.org/10.1007/s00705-006-0867-z

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