Skip to main content
Log in

The role of inter-subunit ionic interactions in the assembly of Physalis mottle tymovirus

  • Published:
Archives of Virology Aims and scope Submit manuscript

Summary.

Physalis mottle tymovirus (PhMV) is a small spherical plant virus with its RNA genome encapsidated in a protein shell made of 180 identical coat protein (CP) subunits. The amino acid residues involved in two interfacial salt bridges, Asp-83/Arg-159 and Arg-68/Asp-150 and Lys-153, were targeted for mutagenesis with a view to delineate the role of interfacial ionic interactions in the subunit folding and assembly of the virus. R159A and D83A-R159A recombinant CP (rCP) mutants formed stable T = 3 capsids, indicating that the D83-R159 interfacial salt bridge is dispensable for the folding and assembly of PhMV. However, D150A and R68Q-D150A mutant rCPs were present in the insoluble fraction, suggesting that the R68-D150 interfacial salt bridge is crucial for subunit folding and assembly. Similarly, K153Q, D83A-K153Q, and H69A-K153Q mutant rCPs were present in the insoluble fraction. Interestingly, the R68Q-D150A, D83A-K153Q, and H69A-K153Q double mutant rCPs could be refolded into partially folded soluble heterogeneous aggregates of 14–16 S. The results further confirm our earlier observation that subunit folding and assembly are concerted events in PhMV.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Abbreviations

PhMV:

Physalis mottle tymovirus

rCP:

recombinant coat protein

CP:

coat protein

ANS:

8-anilino-1-naphthalenesulfonate

IPTG:

isopropyl-1-thio-b-D-galactopyranoside

References

  • DC Ansardi DC Porter MJ Anderson CD Morrow (1996) ArticleTitlePoliovirus assembly and encapsidation of genomic RNA Adv Virus Res 46 1–68 Occurrence Handle8824697 Occurrence Handle1:STN:280:BymH383gvVQ%3D Occurrence Handle10.1016/S0168-1702(96)01371-8

    Article  PubMed  CAS  Google Scholar 

  • PB Berget (1985) Pathways in viral morphogenesis S Casjens (Eds) Virus structure and assembly Jones and Bartlett Boston

    Google Scholar 

  • MK Brakke N Van Pelt (1970) ArticleTitleLinear-log sucrose gradients for estimating sedimentation coefficients of plant viruses and nucleic acids Anal Biochem 38 56–64 Occurrence Handle5478252 Occurrence Handle1:CAS:528:DyaE3MXptl0%3D Occurrence Handle10.1016/0003-2697(70)90155-7

    Article  PubMed  CAS  Google Scholar 

  • T Dokland (2000) ArticleTitleFreedom and restraint: themes in virus capsid assembly Structure Fold Des 8 R157–162 Occurrence Handle10997898 Occurrence Handle1:CAS:528:DC%2BD3cXlsFCmsbc%3D Occurrence Handle10.1016/S0969-2126(00)00181-7

    Article  PubMed  CAS  Google Scholar 

  • ANK Jacob HS Savithri (1991) ArticleTitleIn vitro expression of belladonna mottle virus genome Ind J Biochem Biophys 28 456–460 Occurrence Handle1:CAS:528:DyaK38Xltlyiug%3D%3D

    CAS  Google Scholar 

  • JM Johnson DA Willits MJ Young A Zlotnick (2004) ArticleTitleInteraction with capsid protein alters RNA structure and the pathway for in vitro assembly of Cowpea chlorotic mottle virus J Mol Biol 335 455–464 Occurrence Handle14672655 Occurrence Handle1:CAS:528:DC%2BD3sXps1eqsro%3D Occurrence Handle10.1016/j.jmb.2003.10.059

    Article  PubMed  CAS  Google Scholar 

  • PJ Kraulis (1991) ArticleTitleMolscript: a program to produce both detailed and schematic plots of protein structures J Appl Crystallogr 24 946–950 Occurrence Handle10.1107/S0021889891004399

    Article  Google Scholar 

  • SS Krishna CN Hiremath SK Munshi D Prahadeeswaran M Sastri HS Savithri MRN Murthy (1999) ArticleTitleThree-dimensional structure of physalis mottle virus: implications for the viral assembly J Mol Biol 289 919–934 Occurrence Handle10369772 Occurrence Handle1:CAS:528:DyaK1MXjslKhsbg%3D Occurrence Handle10.1006/jmbi.1999.2787

    Article  PubMed  CAS  Google Scholar 

  • SS Krishna M Sastri HS Savithri MRN Murthy (2001) ArticleTitleStructural studies on the empty capsids of Physalis mottle virus J Mol Biol 307 1035–1047 Occurrence Handle11286554 Occurrence Handle1:CAS:528:DC%2BD3MXitlOisro%3D Occurrence Handle10.1006/jmbi.2001.4533

    Article  PubMed  CAS  Google Scholar 

  • UK Laemmli (1970) ArticleTitleCleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680–685 Occurrence Handle5432063 Occurrence Handle1:CAS:528:DC%2BD3MXlsFags7s%3D Occurrence Handle10.1038/227680a0

    Article  PubMed  CAS  Google Scholar 

  • EA Merritt DJ Bacon (1997) ArticleTitleRaster 3d: photorealistic molecular graphics Methods Enzymol 277 505–524 Occurrence Handle1:CAS:528:DyaK2sXntFals7s%3D Occurrence Handle10.1016/S0076-6879(97)77028-9 Occurrence Handle18488322

    Article  CAS  PubMed  Google Scholar 

  • M Sastri R Kekuda K Gopinath CT Kumar JR Jagath HS Savithri (1997) ArticleTitleAssembly of physalis mottle virus capsid protein in Escherichia coli and the role of amino and carboxy termini in the formation of the icosahedral particles J Mol Biol 272 541–552 Occurrence Handle9325111 Occurrence Handle1:CAS:528:DyaK2sXms1Sntrk%3D Occurrence Handle10.1006/jmbi.1997.1258

    Article  PubMed  CAS  Google Scholar 

  • M Sastri DS Reddy SS Krishna MRN Murthy HS Savithri (1999) ArticleTitleIdentification of a discrete intermediate in the assembly/disassembly of physalis mottle tymovirus through mutational analysis J Mol Biol 289 905–918 Occurrence Handle10369771 Occurrence Handle1:CAS:528:DyaK1MXjslKhsbs%3D Occurrence Handle10.1006/jmbi.1999.2786

    Article  PubMed  CAS  Google Scholar 

  • FW Studier BA Moffatt (1986) ArticleTitleUse of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes J Mol Biol 189 113–130 Occurrence Handle3537305 Occurrence Handle1:CAS:528:DyaL28XktlKrsr4%3D Occurrence Handle10.1016/0022-2836(86)90385-2

    Article  PubMed  CAS  Google Scholar 

  • U Szybiak JP Bouley C Fritsch (1978) ArticleTitleEvidence for the existence of a coat protein messenger RNA associated with the top component of each of three tymoviruses Nucleic Acids Res 5 1821–1831 Occurrence Handle673836 Occurrence Handle1:CAS:528:DyaE1cXltVegsbk%3D

    PubMed  CAS  Google Scholar 

  • M Umashankar MRN Murthy HS Savithri (2003) ArticleTitleMutation of interfacial residues disrupts subunit folding and particle assembly of Physalis mottle tymovirus J Biol Chem 278 6145–6152 Occurrence Handle12477730 Occurrence Handle1:CAS:528:DC%2BD3sXht1aqur8%3D Occurrence Handle10.1074/jbc.M207992200

    Article  PubMed  CAS  Google Scholar 

  • MP Weiner GL Costa W Schoettlin J Cline E Mathur JC Bauer (1994) ArticleTitleSite-directed mutagenesis of double-stranded DNA by the polymerase chain reaction Gene 151 119–123 Occurrence Handle7828859 Occurrence Handle1:CAS:528:DyaK2MXjtFShtbw%3D Occurrence Handle10.1016/0378-1119(94)90641-6

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Umashankar, M., Murthy, M., Singh, S. et al. The role of inter-subunit ionic interactions in the assembly of Physalis mottle tymovirus. Arch Virol 151, 1917–1931 (2006). https://doi.org/10.1007/s00705-006-0783-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-006-0783-2

Keywords

Navigation