Summary.
Ribgrass mosaic virus (RMV), turnip vein-clearing virus (TVCV) and Youcai mosaic virus (YoMV; formerly designated as oilseed rape mosaic virus; ORMV) belong to the genus Tobamovirus and are arranged in one out of three subgroups because of their common host range, serological cross-reactivity and amino acid composition of their coat proteins. The recently defined species Wasabi mottle virus (WMoV) is closely related to the same subgroup. The distinction of the four species is difficult and the lack of sequence information of a wide range of isolates has led to an unclear nomenclature. To clarify this situation we sequenced the coat protein genes from 18 isolates which were serologically related to members of the species of this cluster. The size of the coat protein was conserved with the exception of one isolate which revealed an N-terminal extension due to the mutation of three stop-codons. Phylogenetic analysis of these CP ORFs resulted in a tree with three clusters each containing at least one of the approved species RMV, TVCV and 1ptYoMV/WMoV in which our isolates were distributed. The tree was congruent and did support the present taxonomic status of species within this subgroup.
For practical purpose we developed a subgroup 3 specific primer pair and a species differentiating restriction fragment length polymorphism (RFLP). Sequencing of the genome of Streptocarpus flower break virus (SFBV) which is serologically distantly related to the subgroup 3 viruses revealed a distinct genome organization. Therefore we propose that this virus should be regarded as a member of a species not belonging to any of the subgroups so far established.
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References
I Aguilar F Sanchez AM Martin D Martinez-Herrera F Ponz (1996) ArticleTitleNucleotide sequence of Chinese rape mosaic virus (oilseed rape mosaic virus), a crucifer tobamovirus infectious on Arabidopsis thaliana. Plant Mol Biol 30 191–197 Occurrence Handle10.1007/BF00017814 Occurrence Handle1:CAS:528:DyaK28XhsV2it78%3D Occurrence Handle8616237
C Beaumont SV Torti FM Torti WH Massover (1996) ArticleTitleNovel properties of L-type polypeptide subunits in mouse ferritin molecules. J Biol Chem 271 7923–7926 Occurrence Handle10.1074/jbc.271.43.26477 Occurrence Handle1:CAS:528:DyaK28XitFarsLk%3D Occurrence Handle8626471
M Chessin N Juretic D Milicic J Perryman L Giri (1980) ArticleTitleA distinct strain of ribgrass mosaic virus from Montana, USA. Phytopathol Z 97 295–301 Occurrence Handle10.1111/j.1439-0434.1980.tb03698.x
YL Dorokhov PA Ivanov VK Novikov VA Yefimov IG Atabekov (1993) ArticleTitleTobamovirus of cruciferous plants: nucleotide sequence of genes of the transport protein, capsid protein, and 3′-terminal untranslated region. Dokl Akad Nauk SSSR 332 518–522 Occurrence Handle1:CAS:528:DyaK2cXitlOhsbg%3D
M Fukuda T Meshi Y Okada I Takebe (1981) ArticleTitleCorrelation between particle multiplicity and location on virion RNA of the assembly initiation site for viruses of the tobacco mosaic virus group. Proc Natl Acad Sci USA 78 4231–4235 Occurrence Handle1:CAS:528:DyaL3MXlsVOjsLo%3D Occurrence Handle16593057
A Gibbs (1999) ArticleTitleEvolution and origin of tobamoviruses. Phil Trans R Soc Lond B 354 593–602 Occurrence Handle10.1098/rstb.1999.0411 Occurrence Handle1:CAS:528:DyaK1MXisFagtbo%3D
Gibbs A (1986) The viruses. Tobamovirus classification. In: van Regenmortel MHV, Fraenkel-Conrat H (eds), The plant viruses, vol. 2. Plenum Press, New York, 168–180
JV Gooding TT Hebert (1967) ArticleTitleA simple technique of purification of tobacco mosaic virus in large quantities. Phytopathology 57 1285 Occurrence Handle6075009
BD Harrison TMA Wilson (1999) ArticleTitleTobacco mosaic virus: Pioneering research for a century. Phil Transact Roy Soc London B 354 517–685
FO Holmes (1941) ArticleTitleA distinctive strain of tobacco-mosaic virus from Plantago. Phytopathology 31 1089–1098
S Kumar K Tamura M Nei (2004) ArticleTitleMEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5 150–163 Occurrence Handle10.1093/bib/5.2.150 Occurrence Handle1:CAS:528:DC%2BD2cXntFGqu7s%3D Occurrence Handle15260895
UK Laemmli (1979) ArticleTitleCleavage of structural proteins during the assembly of the head bacteriophage T4. Nature 227 680–685
JL Lapido R Koenig D-E Lesemann (2003) ArticleTitleNigerian tobacco latent virus: Tobamovirus from tobacco in Nigeria. Eur J Plant Pathol 109 373–379
RT Lartey TC Voss UK Melcher (1995) ArticleTitleCompletion of a cDNA sequence from a tobamovirus pathogenic to crucifers. Gene 166 321–322 Occurrence Handle10.1016/0378-1119(95)00674-5
RT Lartey TC Voss U Melcher (1996) ArticleTitleTobamovirus evolution: Gene overlaps, recombination and taxonomic implications. Mol Biol Evol 13 1327–1338 Occurrence Handle1:CAS:528:DyaK28XnsVWhur8%3D Occurrence Handle8952077
D-E Lesemann S Winter (1998) ArticleTitleDetection and specific identification of tobamoviruses in horticulture crops by immunoelectron microscopical methods (IEM) and ELISA. Mitt Biol Bundesanst Land-Forstwirtsch Berlin-Dahlem 357 32
B Letschert G Adam D-E Lesemann P Willingmann C Heinze (2002) ArticleTitleDetection and differentiation of serologically cross-reacting tobamoviruses of economical importance by RT-PCR and RT-PCR-RFLP. J Virol Methods 106 1–10 Occurrence Handle10.1016/S0166-0934(02)00135-0 Occurrence Handle1:CAS:528:DC%2BD38XnsVajt74%3D Occurrence Handle12367724
Lewandowski DJ (2001) Genus Tobamovirus. In: van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds), Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruse. Academic Press, San Diego, 889–894
D Marchuk M Drumm A Saulino F Collins (1991) ArticleTitleConstruction of T-vectors, a rapid und general system for direct cloning of unmodified PCR products. Nucleic Acids Res 19 1154 Occurrence Handle1:CAS:528:DyaK3MXhsl2ltb4%3D Occurrence Handle2020552
C Marck (1988) ArticleTitleDNA Strider: a “C” program for the fast analysis of DNA and protein sequences on the Apple Macintosh family computers. Nucleic Acids Res 16 1829–1836 Occurrence Handle1:CAS:528:DyaL1cXhvVWnsLk%3D Occurrence Handle2832831
N Oshima Y Ohashi M Umekawa (1974) ArticleTitleStudies on some strains of tobacco mosaic virus pathogenic to crucifer plants. 2. Host range. Ann Phytopathol Soc Jpn 40 243–251
ME Rott W Jelkmann (2001) ArticleTitleCharacterization and detection of several filamentous viruses of cherry: Adaption of an alternative cloning method (DOP-PCR) and modification of an RNA extraction protocol. Eur J Plant Pathol 107 411–420 Occurrence Handle10.1023/A:1011264400482 Occurrence Handle1:CAS:528:DC%2BD3MXlsFSitb8%3D
I Shimamoto S Sonoda P Vazquez N Minaka M Nishiguchi (1998) ArticleTitleNucleotide sequence analysis of the 3′ terminal region of a wasabi strain of crucifer tobamovirus genomic RNA: subgrouping of crucifer tobamoviruses. Arch Virol 143 1801–1813 Occurrence Handle10.1007/s007050050418 Occurrence Handle1:CAS:528:DyaK1cXms1GgsrY%3D Occurrence Handle9787663
E Takano M Maki H Mori M Hatanaka T Marti K Titani R Kannagi T Ooi T Murachi (1988) ArticleTitlePig heart calpastatin: identification of repetitive domain structures and anomalous behavior in polyacrylamide gel electrophoresis. Biochemistry 27 1964–1972 Occurrence Handle10.1021/bi00406a024 Occurrence Handle1:CAS:528:DyaL1cXht1Onsbo%3D Occurrence Handle2837276
F Tenllado I Garcia-Luque MT Serra JR Diaz-Ruiz (1994) ArticleTitleRapid detection and differentiation of tobamoviruses infecting L-resistant genotypes of pepper by RT-PCR and restriction analysis. J Virol Methods 47 165–174 Occurrence Handle10.1016/0166-0934(94)90075-2 Occurrence Handle1:CAS:528:DyaK2MXosVSl Occurrence Handle8051224
JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins (1997) ArticleTitleThe CLUSTAL X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24 4876–4882
van Regenmortel MHV (1986) Tobacco mosaic virus: antigenic structure. In: van Regenmortel MHV, Fraenkel-Conrad H (eds), The plant viruses, vol. 2. Plenum Press, New York, 79–104
L Velasco D Janssen L Ruiz-Garcia E Segundo IM Cuadrado (2002) ArticleTitleThe complete nucleotide sequence and development of a differential assay for a Pepper mild mottle virus (PMMoV) isolate that overcomes L3 resistance on pepper. J Virol Methods 106 135–140 Occurrence Handle10.1016/S0166-0934(02)00144-1 Occurrence Handle1:CAS:528:DC%2BD38XnsVajtLo%3D Occurrence Handle12367738
TJ Verhoeven I Bouwen JW Roenhorst (1995) ArticleTitleA new flower breaking tobamovirus of Streptocarpus. Eur J Plant Pathol 101 311–318 Occurrence Handle10.1007/BF01874787
H Wang JN Culver GRT Stubbs (1997) ArticleTitleStructure of ribgrass mosaic virus at 2,9 A resolution.: evolution and taxonomy of tobamoviruses. J Mol Biol 269 769–779 Occurrence Handle10.1006/jmbi.1997.1048 Occurrence Handle1:CAS:528:DyaK2sXks1ylsrc%3D Occurrence Handle9223640
Wetter C (1986) Ribgrass mosaic virus. In: van Regenmortel MHV, Fraenkel-Conrat H (eds), The plant viruses, vol. 2. Plenum Press, New York, 221–232
H Zhu J Hong R Ye J Chen S Yu MJ Adams (2001) ArticleTitleSequence analysis shows that Ribgrass mosaic virus Shanghai isolate (RMV-Sh) is closely related to Youcai mosaic virus. Arch Virol 146 1231–1238 Occurrence Handle10.1007/s007050170118 Occurrence Handle1:CAS:528:DC%2BD3MXmt1Wgur8%3D Occurrence Handle11504428
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Heinze, C., Lesemann, DE., Ilmberger, N. et al. The phylogenetic structure of the cluster of tobamovirus species serologically related to ribgrass mosaic virus (RMV) and the sequence of streptocarpus flower break virus (SFBV). Arch Virol 151, 763–774 (2006). https://doi.org/10.1007/s00705-005-0640-8
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DOI: https://doi.org/10.1007/s00705-005-0640-8