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Patterns of genetic variability in central and peripheral populations of Dipteryx alata (Fabaceae) in the Brazilian Cerrado

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Abstract

This study tested whether genetic parameters in Dipteryx alata populations, estimated from genomic and chloroplastidial microsatellite markers, were distributed according to a central-peripheral model, inferring which factors drive this spatial distribution of genetic variability within populations. For each of the 23 populations sampled throughout the species’ range, the mean number of alleles per locus, expected heterozygosity and intrapopulation fixation indices were calculated using a rarefaction approach based on 54 alleles from 8 nuclear microsatellites. Explanatory variables were grouped into three subsets: the ecological suitability estimated by combining different techniques of ecological niche modeling, variables expressing human occupation, and a historical variable represented by the first eigenvector from the pairwise F ST matrix based on cpDNA microsatellites. Each response variable was modeled using first (linear) and second (quadratic) order trend surface analysis (TSA). Multiple regressions were then used to evaluate the relative effects of the explanatory variables, based on AIC multi-model selection. In general, the genetic parameters did not follow a classical central-periphery model. Ecological suitability had a significance influence in all genetic parameters, so more suitable regions have higher genetic diversity and low endogamy. There was also a relationship between fixation indices and human impacts. The high genetic diversity in the southwestern region of Cerrado suggested that recent range expansion (after the Last Glacial Maximum) may also influenced the observed intrapopulation genetic patterns. Thus, complex combinations of both historical and ecological drivers, as well as contemporary human occupation, seem to drive current genetic composition within D. alata populations throughout its geographic range.

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Acknowledgments

We thank two anonymous reviewers for suggestions that widely improved early versions of the manuscript. Our research program integrating macroecology and molecular ecology of plants has been continuously supported by several grants and fellowships to the research network GENPAC (Geographical Genetics and Regional Planning for natural resources in Brazilian Cerrado) from CNPq/MCT/CAPES (projects # 564717/2010-0, 563624/2010-8 and 563727/2010-1) and by the “Núcleo de Excelência em Genética e Conservação de Espécies do Cerrado”—GECER (PRONEX/FAPEG/CNPq CH07-2009).We thank Thiago F. Rangel for providing access to computational platform BIOENSEMBLES, which was essential to build the niche models. Field work has been supported by Systema Naturae Consultoria Ambiental LTDA. All authors are also supported by productivity grants from CNPq.

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Authors and Affiliations

  1. Departamento de Genetica, Instituto de Ciências Biológicas, Universidade Federal de Goiás (UFG), Campus Samambaia, Caixa Postal 131, Goiânia, GO, 74001-970, Brazil

    Thannya N. Soares & Mariana P. de Campos Telles

  2. Departamento de Ecologia, Instituto de Ciências Biológicas, UFG, Goiânia, GO, Brazil

    José A. F. Diniz-Filho

  3. Unidade de Ciências Exatas e Tecnológicas, Universidade Estadual de Goiás (UEG), Anápolis, GO, Brazil

    João C. Nabout

  4. Departamento de Biologia, UFG, Campus Jataí, Jataí, GO, Brazil

    Levi C. Terribile

  5. Escola de Agronomia, UFG, Goiânia, GO, Brazil

    Lázaro J. Chaves

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  1. Thannya N. Soares
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  2. José A. F. Diniz-Filho
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  3. João C. Nabout
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  4. Mariana P. de Campos Telles
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  5. Levi C. Terribile
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Correspondence to Thannya N. Soares.

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Soares, T.N., Diniz-Filho, J.A.F., Nabout, J.C. et al. Patterns of genetic variability in central and peripheral populations of Dipteryx alata (Fabaceae) in the Brazilian Cerrado. Plant Syst Evol 301, 1315–1324 (2015). https://doi.org/10.1007/s00606-014-1155-0

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