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Molecular evidence for polyphyly in the woody bamboo genus Dendrocalamus (subtribe Bambusinae)

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Abstract

Dendrocalamus is an economically important woody bamboo genus from the Old World tropics. The traditional circumscription of the genus is not satisfactory owing to overlapping limits between Bambusa and Dendrocalamus. Limited earlier studies in the genus, using molecular techniques, have reported wide genetic variation, and there is disagreement among published infrageneric classifications in the genus. Thus, lack of sound taxonomy is hindering scientific conservation and management of the woody bamboos belonging to this genus. In the present study, amplified fragment length polymorphism markers (AFLPs), generated using five primer combinations, were used to investigate relationships among ten Dendrocalamus (D. strictus, D. hamiltonii, D. membranaceus, D. brandisii, D. sikkimensis, D. asper, D. giganteus, D. calostachyus, D. sahnii and D. somdevai) and five outgroup species (Bambusa balcooa, Dinochloa macclellandii, Melocalamus compactiflorus, Oxytenanthera abyssinica and Thyrsostachys siamensis) from subtribe Bambusinae. Neighbour-joining and maximum-parsimony analyses of AFLP dataset provided evidence for polyphyly in the current circumscription of Dendrocalamus. All Dendrocalamus taxa, except D. strictus, clustered into three monophyletic groups. The type species Dendrocalamus strictus was found to be genetically distant from the rest of the Dendrocalamus and did not cluster into any of these groups. Furthermore, Bambusa balcooa was recovered in a cluster containing D. hamiltonii and D. sikkimensis. The study did not find support for the various earlier infrageneric classifications within Dendrocalamus. The implications of the findings are discussed.

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References

  • Alam MK, Sarker RH, Hassan MA (1997) Chemotaxonomic studies in peroxidase isozyme of bamboos from Bangladesh. Bangladesh J Bot 26:99–105

    Google Scholar 

  • Bentham G (1883) Gramineae. In: Bentham G, Hooker JD (eds) Genera plantarum III. Reeve, London, pp 1094–1215

    Google Scholar 

  • Biswas S (1998) Contribution to the isozyme studies on Indian bamboo Dendrocalamus strictus (Roxb.) Nees with emphasis on diversity evaluation. Ann For 5:168–172

    Google Scholar 

  • Chase MW, Hills HH (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40:215–220

    Article  Google Scholar 

  • Chou CH, Hwang YH (1985) A biochemical aspect of phylogenetic study of Bambusaceae in Taiwan III. The genera Arthrostylidium, Chimonobambusa and Dendrocalamus. Bot Bull Acad Sin 26:155–170

    CAS  Google Scholar 

  • Clark LG (1997) Diversity, biogeography and evolution of Chusquea. Linn Soc Symp Ser 19:33–44

    Google Scholar 

  • Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13–15

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evol 39:783–791

    Article  Google Scholar 

  • Gamble JS (1896) The Bambuseae of British India. Ann R Bot Gard 7:1–133

    Google Scholar 

  • Hodkinson TR, Renvoize SA, Chonghaile GN, Stapleton CMA, Chase MW (2000) A comparison of ITS nuclear rDNA sequence data and AFLP markers for phylogenetic studies in Phyllostachys (Bambusoideae, Poaceae). J Pl Res 113:259–269

    Article  CAS  Google Scholar 

  • Hsueh C, Li DZ (1988) A study on the genus Dendrocalamus Nees from China. J Bamboo Res 7:1–19

    Google Scholar 

  • Inada T (2004) African bamboos: an appraisal with special reference to Oxytenanthera abyssinica, the savanna bamboo, Ph.D. thesis, Bangor University

  • Jaccard P (1908) Nouvelles recherches sur la distribution florale. Bull Soc Vaud Sci Nat 44:223–270

    Google Scholar 

  • Koopman WJM, Zevenberger MJ, Van Den Berg RG (2001) Species relationships in Lactuca s.l. (Lactuceae, Asteraceae) inferred from AFLP fingerprints. Am J Bot 88:1881–1887

    Article  CAS  Google Scholar 

  • Koopman WJM, Wissemann V, Cock KD, Huylenbroeck JV, Riek JD, Sabatino GJH, Visser D, Vosman B, Ritz CM, Maes B, Werlemark G, Nybom H, Debener T, Linde M, Smulders MJM (2008) AFLP markers as a tool to reconstruct complex relationships: a case study in Rosa (Rosaceae). Am J Bot 95:353–366

    Article  CAS  Google Scholar 

  • Li DZ, Stapleton C (2006) Flora of China. http://www.efloras.org. Accessed 20 Dec 2007

  • Loh JP, Kiew R, Set O, Gan LH, Gan YY (2000) A study of genetic variation and relationships within the bamboo subtribe Bambusinae using amplified fragment length polymorphism. Ann Bot 85:607–612

    Article  CAS  Google Scholar 

  • Mueller UG, Wolfenbarger LL (1999) AFLP genotyping and fingerprinting. Trends Ecol Evol 14:389–393

    Article  PubMed  Google Scholar 

  • Munro W (1868) A monograph of Bambusaceae, including descriptions of all the species. Trans Linn Soc Lond 26:1–157

    Article  Google Scholar 

  • Ohrnberger D (1999) The bamboos of the World: annotated nomenclature and literature of the species and the higher and lower taxa. Elsevier, Amsterdam

    Google Scholar 

  • Pavlicek A, Hrda S, Flegr J (1999) FreeTree: freeware programme for construction of phylogenetic trees on the basis of distance data and bootstrap/jackknife analysis of tree robustness. Application in the RAPD analysis of the genus Frenkelia. Folia Biol 45:97–99

    CAS  Google Scholar 

  • Perrie LR, Brownsey PJ (2005) Genetic variation is not concordant with morphological variation in the fern Asplenium hookerianum sensu lato (Aspleniaceae). Am J Bot 92:1559–1564

    Article  Google Scholar 

  • Ramanayake SMS, Meemaduma VN, Weerawardene TE (2007) Genetic diversity and relationships between nine species of bamboo in Sri Lanka, using random amplified polymorphic DNA. Pl Syst Evol 269:55–61

    Article  CAS  Google Scholar 

  • Rohlf FJ (2000) NTSYSpc: numerical taxonomy and multivariate analysis system, version 2.11X. Applied Biostatistics, New York

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  • Stapleton CMA (1994) The bamboos of Nepal and Bhutan, Part I. Edinb J Bot 51:1–32

    Article  Google Scholar 

  • Sun Y, Xia N, Lin R (2005) Phylogenetic analysis of Bambusa (Poaceae: Bambusoideae) based on internal transcribed spacer sequences of nuclear ribosomal DNA. Biochem Genet 43:603–612

    Article  CAS  PubMed  Google Scholar 

  • Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland

    Google Scholar 

  • Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kupier M, Zabeau M (1995) AFLP: a new technique for DNA finger printing. Nucleic Acids Res 23:4407–4414

    Article  CAS  PubMed  Google Scholar 

  • Watanabe M, Ito M, Kurita S (1994) Chloroplast DNA phylogeny of Asian bamboos (Bambusoideae, Poaceae) and its systematic implication. J Pl Res 107:253–261

    Article  CAS  Google Scholar 

  • Yang HQ, Yang JB, Peng ZH, Gao J, Yang YM, Peng S, Li DZ (2008) A molecular phylogenetic and fruit evolution analysis of the major groups of the paleotropical woody bamboos (Gramineae: Bambusoideae) based on nuclear ITS, GBSSI and plastid trnL-F DNA sequences. Mol Phylogenet Evol 48:809–824

    Article  CAS  PubMed  Google Scholar 

  • Zhang W, Clark LG (2000) Phylogeny and classification of the Bambusoideae (Poaceae). In: Jacobs SWL, Everett J (eds) Grasses: systematics and evolution. CSIRO, Melbourne, pp 35–42

    Google Scholar 

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Acknowledgments

The first author acknowledges the financial help, in the form of Commonwealth Scholarship, from the Commonwealth Scholarships Commission, UK. Sincere thanks are due to Dr. Katherine Steele, CAZS-Natural Resources, Bangor University for introducing the first author to the intricacies of the AFLP technique and generously allowing to use her laboratory facility for this investigation. Many friends and colleagues from FRI, Dehra Dun; RFRI, Jorhat; SFRI, Itanagar; ICAR Research Complex for NEH region, Basar; Central National Herbarium, BSI, Kolkata extended their generous help during the field visits of the first author, which is gratefully acknowledged. Also, the first author thanks Sri M. Lokeswara Rao, Head, Forest Research Centre (ICFRE), Hyderabad, for his encouragements to publish this material.

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Correspondence to Swapnendu Pattanaik.

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Pattanaik, S., Hall, J.B. Molecular evidence for polyphyly in the woody bamboo genus Dendrocalamus (subtribe Bambusinae). Plant Syst Evol 291, 59–67 (2011). https://doi.org/10.1007/s00606-010-0380-4

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  • DOI: https://doi.org/10.1007/s00606-010-0380-4

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