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A gold nanoparticle-based colorimetric mercury(II) biosensor using a DNA probe with phosphorothioate RNA modification and exonuclease III-assisted signal amplification

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Abstract

Herein, we report a rapid and sensitive colorimetric detection of Hg2+ by designing a specific DNA probe with phosphorothioate RNA modification (PS-probe) for Hg2+ recognition and utilizing DNA-modified gold nanoparticles (DNA-AuNPs) as the transducer. The distance between two DNA-AuNPs is controlled by a linker DNA, providing the linker DNA-regulated aggregation or dispersion status of AuNPs in solution. Exonuclease III (Exo III) can trigger the recycled digestion of linker DNA strands, inhibiting the reformation of aggregated nanoparticles and hence leading to a color shift from purple to red. However, the Hg2+-induced cleavage of the PS-probe can efficiently prevent the digestion of linker DNA strands by Exo III and hence reassemble the modified AuNPs to form aggregates in purple color. Thus, a positive correlation between the linker DNA strands left and the addition of Hg2+ provides a quantitative basis for Hg2+ sensing. A linear range of A520/A700 versus Hg2+ concentration is achieved in the range 2–100 nM associated with a detection limit as low as 1.30 ± 0.04 nM. Moreover, the biosensor exhibits excellent selectivity for Hg2+. The strong selectivity behavior was confirmed by recoveries ranging from 96 to 114% in real water samples.

Schematic representation of sensing mechanism of Hg2+ using a DNA probe with phosphorothioate RNA modification (PS-probe) and Exo III-assisted signal amplification

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Funding

This research is supported by the Beijing Municipal Natural Science Foundation-Haidian Primitive Innovation Joint Fund Project (L182045).

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Author notes

  1. Yunpeng Xing and Qian Zhu contributed equally to this work.

Authors and Affiliations

  1. State Key Joint Laboratory of ESPC, School of Environment, Tsinghua University, Beijing, 100084, China

    Yunpeng Xing, Qian Zhu & Xiaohong Zhou

  2. State Key Laboratory of Urban Water Resource and Environment, School of Environment, Harbin Institute of Technology, Harbin, 150090, China

    Yunpeng Xing & Peishi Qi

  3. National Engineering Laboratory for advanced technology and equipment of water environment pollution monitoring, Changsha, 410205, China

    Yunpeng Xing & Xiaohong Zhou

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  1. Yunpeng Xing
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  2. Qian Zhu
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Correspondence to Xiaohong Zhou or Peishi Qi.

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Xing, Y., Zhu, Q., Zhou, X. et al. A gold nanoparticle-based colorimetric mercury(II) biosensor using a DNA probe with phosphorothioate RNA modification and exonuclease III-assisted signal amplification. Microchim Acta 187, 214 (2020). https://doi.org/10.1007/s00604-020-4184-0

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