Abstract
With growing importance of water resources in the world, remediations of anthropogenic contaminations due to reactive solute transport become even more important. A good understanding of reactive rate parameters such as kinetic parameters is the key to accurately predicting reactive solute transport processes and designing corresponding remediation schemes. For modeling reactive solute transport, it is very difficult to estimate chemical reaction rate parameters due to complex processes of chemical reactions and limited available data. To find a method to get the reactive rate parameters for the reactive urea hydrolysis transport modeling and obtain more accurate prediction for the chemical concentrations, we developed a data assimilation method based on an ensemble Kalman filter (EnKF) method to calibrate reactive rate parameters for modeling urea hydrolysis transport in a synthetic one-dimensional column at laboratory scale and to update modeling prediction. We applied a constrained EnKF method to pose constraints to the updated reactive rate parameters and the predicted solute concentrations based on their physical meanings after the data assimilation calibration. From the study results we concluded that we could efficiently improve the chemical reactive rate parameters with the data assimilation method via the EnKF, and at the same time we could improve solute concentration prediction. The more data we assimilated, the more accurate the reactive rate parameters and concentration prediction. The filter divergence problem was also solved in this study.
Similar content being viewed by others
References
Andrews RK, Blakeley RL, Zerner B (1984) Urea and urease. Adv Inorg Biochem 6:245–283
Bear J (1972) Dynamics of fluids in porous media. Elsevier, New York
Bennion BJ, Daggett V (2003) The molecular basis for the chemical denaturation of proteins by urea. Proc Natl Acad Sci USA 100(9):5142–5147
Bertino L, Evensen G, Wackernagel H (2003) Sequential data assimilation techniques in oceanography. Int Stat Rev 71(2):223–241
Bocquet M, Pires CA, Wu L (2010) Beyond Gaussian statistical modeling in geophysical data assimilation. Mon Weather Rev 138:2997–3023
Briant AK, Robert LR, Richard BW, Philip LV (2010) Reactive solute-transport simulation of pre-mining metal concentrations in mine-impacted catchments: Redwell Basin, Colorado, USA. Chem Geol 269:124–136
Burgers G, van Leeuwen PJ, Evensen G (1998) Analysis scheme in the ensemble Kalman filter. Mon Weather Rev 126:1719–1724
Burne RA, Chen YY (2000) Bacterial ureases in infectious diseases. Microbes Infect 2(5):533–542
Chang HB, Chen Y, Zhang DX (2010) Data assimilation of coupled fluid flow and geomechanics via ensemble Kalman filter. SPE 118963
Chen Y, Zhang D (2006) Data assimilation for transient flow in geologic formations via ensemble Kalman Filter. Adv Water Resour 29:1107–1122
Ciurli S, Benini S, Rypniewski WR, Wilson KS, Miletti S, Mangani S (1999) Structural properties of the nickel ions in urease: novel insights into the catalytic and inhibition mechanisms. Coord Chem Rev 190:331–335
Delay R (1991) Atmospheric data analysis. Cambridge University Press, New York, p 457
DOE (2006) Operable Unit 3-14 Tank Farm Soil and Groundwater Remedial Investigation/Baseline Risk Assessment. U. S. Department of Energy, Idaho Falls, ID
Eknes M, Evensen G (2002) An ensemble Kalman filter with a 1-D ecosystem model. J Mar Syst 36:75–100
Evensen G (1994) Sequential data assimilation with a nonlinear quasi-geostrophic model using Monte Carlo methods to forecast error statistics. J Geophys Res 99 (C5):10.143–10.162
Evensen G (2003) The ensemble Kalman filter: theoretical formulation and practical implementation. Ocean Dyn 253:343–367
Evensen G (2004) Sampling strategies and square root analysis schemes for the EnKF. Ocean Dyn 54:539–560
Evensen G (2006) Data assimilation: the ensemble Kalman filter. Springer, New York
Evensen G (2009) The ensemble Kalman filter for combined state and parameter estimation. IEEE Control Syst Mag 29(3):83–104
Fang YL, Yeh GT, Burgos WD (2003) A general paradigm to model reaction-based biogeochemical processes in batch systems. Water Resour Res 39(4):25
Fang F, Piggott MD, Pain CC, Gorman GJ, Goddard AJH (2006) An adaptive mesh adjoint data assimilation method. Ocean Model 15:39–55
Fidaleo M, Lavecchia R (2003) Kinetic study of enzymatic urea hydrolysis in the pH range 4–9. Chem Biochem Eng Q 17(4):311–318
Franssen HJH, Kinzelbach W (2009) Ensemble Kalman filtering versus sequential self-calibration for inverse modeling of dynamic groundwater flow systems. J Hydrol. doi:10.1016/j.jhydrol.2008.11.033
Gu Y, Oliver DS (2005) History matching of the PUNQ-S3 reservoir model using the ensemble Kalman filter. SPE Journal 10(2):217–224
Gu Y, Oliver DS (2006) The ensemble Kalman filter for continuous updating of reservoir simulation models. J Energy Resour Technol 128(1):79–87
Guo LJ (2009) Reactive solute transport in heterogeneous porous media—numerical simulation of urea hydrolysis and calcite precipitation using STOMP. Master Thesis
Hamill TM, Whitaker JS, Snyder C (2001) Distance-dependent filtering of background error covariance estimates in an ensemble Kalman filter. Mon Weather Rev 129:2776–2790
Harlem J, Majda AJ (2010) Catastrophic filter and divergence in filtering nonlinear dissipative system. Commun Math Sci 8(1):27–43
Hemant AP, Oliver DS (2009) Data assimilation using the constrained ensemble Kalman filter (SPE 125101). In: SPE annual technical conference. New Orleans, Louisiana, 4–7 Oct 2009
Hotta S, Funamizu N (2008) Inhibition factor of ammonification in stored urine with fecal contamination. Water Sci Technol 58(6):1187–1192
Houtekamer PL, Mitchell HL (1998) Data assimilation using an ensemble Kalman filter technique. Mon Weather Rev 126:796–811
Houtekamer PL, Mitchell HL (2001) A sequential ensemble Kalman filter for atmospheric data assimilation. Mon Weather Rev. 129:123–137
Huang TC, Chen DH (1992) Variations of ammonium ion concentration and solution pH during the hydrolysis of urea by urease. Chem Technol Biotechnol 55(1):45–51
Huang C, Li X, Lu L, Gu J (2008a) Experiments of one-dimensional soil moisture assimilation system based on ensemble Kalman filter. Remote Sens Environ 112(3):888–900
Huang C, Li X, Lu L (2008b) Retrieving soil temperature profile by assimilating MODIS LST products with ensemble Kalman filter. Remote Sens Environ 112(4):1320–1336
Huang C, Bill XH, Li X, Ye M (2009) Using data assimilation method to calibrate a heterogeneous conductivity field and improve solute transport prediction with an unknown contamination source. Stoch Environ Res Risk Assess 23(8):1155–1167. doi:10.1007/s00477-008-0289-4
Jabri E, Carr MB, Hausinger PP, Karplus PA (1995) The crystal structure of urease from Klebsiella aerogenes. Science 19(268):988–1004
Karplus PA, Pearson MA, Hausinger RP (1997) 70 years of crystalline urease: what have we learned? Acc Chem Res 30(8):330–337
Komma J, Bloschl G, Reszler C (2008) Soil moisture updating by ensemble Kalman filtering in real-time flood forecasting. J Hydrol 357:228–242
Lenartz F, Raick C, Soetaert K, Gregoire M (2007) Application of an Ensemble Kalman filter to a 1-D coupled hydrodynamic-ecosystem model of the Ligurian Sea. J Mar Syst. doi:10.1016/j.jmarsys.2006.12.001
Moradkhani HS, Sorooshian H, Gupta V, Houser PR (2005) Dual state-parameter estimation of hydrological models using ensemble Kalman filter. Adv Water Resour 28:135–147
Naevdal G, Johnsen LM, Aanonsen SI, Vefring EH (2003) Reservoir monitoring and continuous model updating using ensemble Kalman filter. SPE 84372
Nerger L, Danilov S, Kivman G, Hiller W, Schroter J (2007) Data assimilation with the ensemble Kalman Filter and the SEIK filter applied to a finite element model of the North Atlantic. J Mar Syst 65:288–298
Ott E, Hunt BR, Szunyogh I, Zimin AV, Kostelich EJ, Corazza M, Kalnay E, Patil DJ, Yorke JA (2004) A local ensemble Kalman filter for atmospheric data assimilation. Tellus 56:415–428
Pan M, Wood EF (2006) Data assimilation for estimating the terrestrial water budget using a constrained ensemble Kalman filter. J Hydrometeorol 7(3):534–547
Patra DD, Kiran U, Chand S, Anwar M (2009) Use of urea coated with natural products to inhibit urea hydrolysis and nitrification in soil. Biol Fertil Soils 45(6):617–621
Prakash J, Patwardhan SC, Shah SL (2008) Constrained state estimation using the ensemble Kalman filter. In: American Control Conference, Westin Seattle Hotel, Seattle, Washington, 11–13 June 2008
Qin Y, Cabral JMS (2002) Review properties and applications of urease. Biocat Biotrans 20:1–14
Reichle RH, Mclaughlin DB, Entekhabi D (2002a) Hydrologic data assimilation with the ensemble Kalman filter. Mon Weather Rev 130:103–114
Reichle RH, Walker JP, Koster RD (2002b) Extended versus ensemble filtering for land data assimilation. J Hydrometeorol 3:728–740
Sigurd IA, Nævdal G, Oliver DS, Reynolds AC, Vallès B (2009) The ensemble Kalman filter in reservoir engineering—a review. SPE J. doi:10.2118/117274-PA
Steefel CI, MacQuarrie KTB (1996) Approaches to modeling of reactive transport in porous media. In: Lichtner PC, Steefel CI, Oelkers EH (eds) Reactive transport in porous media. Rev Mineral 34:83–125
Thacker WC (2007) Data assimilation with inequality constraints. Ocean Model 16(3–4):264–276
Thomsen PG, Zlatev Z (2008) Development of a data assimilation algorithm. Comput Math Appl 55:2381–2393
Tong JX, Hu BX, Yang JZ (2010) Using data assimilation method to calibrate a heterogeneous conductivity filed conditioning on a transient flow test data. Stoch Environ Res Risk Assess. doi:10.1007/s00477-010-0392-1
Tong JX, Hu BX, Yang JZ (2012a) Data assimilation methods for estimating a heterogeneous conductivity field by assimilating transient solute transport data via ensemble Kalman filter. Hydrol Process. doi:10.1002/hyp.9523
Tong JX, Hu BX, Yang JZ (2012b) Assimilating transient groundwater flow data via a localized ensemble Kalman filter to calibrate a heterogeneous conductivity field. Stoch Environ Res Risk Assess. doi:10.1007/s00477-011-0534-0
Varner JE (1976) Urease. In: Boyer PB, Lardy H, Myrback K (eds) The Enzymes. Acedemic Press, New York, pp 247–256
Wang DB, Chen YG, Cai XM (2009) State and parameter estimation of hydrologic models using the constrained ensemble Kalman filter. Water Resour Res 45:W11416. doi:10.1029/2008WR007401
Weerts AH, El Serafy GYH (2006) Particle filtering and ensemble Kalman filtering for state updating with hydrological conceptual rainfall-runoff models. Water Resour Res 45:W09403. doi:10.1029/2005WR004093
Wen X-H, Chen W-H (2005) Real-time reservoir model updating using ensemble Kalman filter. SPE J 11(4):431–442
White MD, McGrail BP (2005) Stomp (subsurface transport over multiple phases) version 1.0 Addendum: Eckechem equilibrium-conservation-kinetic equation chemistry and reactive transport report PNNL-15482, Pacific Northwest National Laboratory, Richland, Washington
White MD, Oostrom M (2000) Stomp (subsurface transport over multiple phases version 2.0: theory guide. Report PNNL-12030, Pacific Northwest National Laboratory, Richland, Washington
White MD, Oostrom M (2006) Stomp subsurface transport over multiple phases: user’s guide. Report PNNL-15782 (UC-2010), Pacific Northwest National Laboratory, Richland, Washington
Xu T, Gerard F, Pruess K, Brimhall G (1997) Modeling non-isothermal multiphase multi-species reactive chemical transport in geologic media. Report LBNL-40504, Ernest Orlando Lawrence Berkeley National Laboratory, Berkeley, California
Yeh GT, Burgos WD, Zachara JM (2001) Modeling and measuring biogeochemical reactions: system consistency, data needs, and rate formulations. Adv Environ Res 5(3):219–237
Yeh GT, Li Y, Jardine PM, Burgos WD, Fang Y, Li MH, Siegel MD (2004) Hydrogeochem 4.0: a coupled model of fluid flow, thermal transport, and hydrogeochemica transport through saturated-unsaturated media: version 4.0. Report ORNL/TM-2004/103, Oak Ridge National Laboratory, Oak Ridge, TN
Acknowledgments
This work is partly supported by the National Nature Science Foundation of China (Grant No. 51209187), the Fundamental Research Funds for the Central Universities (Grant No. 2652011286) and the National Nature Science Foundation of China Major Research Project (Grant No. 91125024).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Tong, J., Hu, B.X., Huang, H. et al. Application of a data assimilation method via an ensemble Kalman filter to reactive urea hydrolysis transport modeling. Stoch Environ Res Risk Assess 28, 729–741 (2014). https://doi.org/10.1007/s00477-013-0786-y
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00477-013-0786-y