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Algorithmica

, Volume 81, Issue 9, pp 3692–3706 | Cite as

An \(O(n \log n)\) Time Algorithm for Computing the Path-Length Distance Between Trees

  • David BryantEmail author
  • Celine Scornavacca
Article
  • 41 Downloads

Abstract

Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in tree shape as well as differences between branch lengths. The distance equals the sum, over all pairs of taxa, of the squared differences between the lengths of the unique path connecting them in each tree. We describe an \(O(n \log n)\) time for computing this distance, making extensive use of tree decomposition techniques introduced by Brodal et al. (Algorithmica 38(2):377–395, 2004).

Keywords

Phylogeny Tree comparison metrics Path-length metric Tree decomposition 

Mathematics Subject Classification

68Q25 92D15 05CO5 

Notes

Acknowledgements

This research was made possible due to travel funds made available from a Marsden Grant to DB. Both authors thank David Swofford for help finding an error in an earlier version of Proposition 1.

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Copyright information

© Springer Science+Business Media, LLC, part of Springer Nature 2019

Authors and Affiliations

  1. 1.Department of Mathematics and StatisticsUniversity of OtagoDunedinNew Zealand
  2. 2.ISEM, CNRS, Université de Montpellier, IRD, EPHEMontpellierFrance

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