Skip to main content
Log in

Characteristics of intestinal microbiota in children with idiopathic short stature: a cross-sectional study

  • RESEARCH
  • Published:
European Journal of Pediatrics Aims and scope Submit manuscript

Abstract

Idiopathic short stature (ISS) accounts for more than 70% of childhood short stature cases, with an undefined etiology and pathogenesis, leading to limited treatment. However, recent studies have shown that intestinal microbiota may be associated with ISS. This study aimed to characterize the intestinal microbiota in children with ISS, effect of treatment with growth hormones, and association between specific bacterial species and ISS. This study enrolled 55 children, comprising 40 diagnosed with ISS at Jinhua Hospital, Zhejiang University, and 15 healthy controls. The subjects with ISS were divided into the untreated ISS group (UISS group, 22 children who had not been treated with recombinant human growth hormone [rhGH]), treated ISS group (TISS group, 18 children treated with rhGH for 1 year), and control group (NC group, 15 healthy children). High-throughput sequencing was used to determine the intestinal microbiota characteristics. Higher abundances of Bacteroides, Prevotella, Alistipes, Parabacteroides, Agathobacter and Roseburia were found in the UISS and TISS groups than in the control group, whereas Bifidobacterium, Subdoligranulum, and Romboutsia were less abundant. The composition of intestinal microbiota in the UISS and TISS groups was almost identical, except for Prevotella. The TISS group had significantly lower levels of Prevotella than did the UISS group, which were closer to those of the NC group. Receiver operating characteristic curve analysis revealed that the abundances of Prevotella, Bifidobacterium, Bacteroides, and Subdoligranulum were effective in differentiating between the UISS and NC groups.

Conclusion: Alterations in intestinal microbiota may be associated with ISS. Specific bacterial species, such as Prevotella, may be potential diagnostic markers for ISS.

What is Known:

• ISS is associated with the GH-IGF-1 axis.

• Recent studies indicated an association between the GH-IGF-1 axis and intestinal microbiota.

What is New:

• Children with ISS showed alterations in intestinal microbiota, with a relative increase in the abundance of gut inflammation-related bacteria.

• The relative abundances of Prevotella, Bacteroides, Bifidobacterium, and Subdoligranulum may serve as potential diagnostic markers.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

Data availability statement

The datasets presented in this paper can be found in online repositories. The names of the repositories and their accession numbers can be found in the NCBI Sequence Read Archive database [accession number PRJNA879917]. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA879917.

Abbreviations

ASV:

Amplicon sequence variant

AUC:

Area under the curve

BMI:

Body mass index

cAMP:

Cyclic adenosine monophosphate

CCDI:

Chinese children dietary index

DNA:

Deoxyribonucleic acid

FFQ:

Food frequency questionnaire

GH:

Growth hormone

GH-IGF-1 axis:

Growth hormone- insulin-like growth factor-1 axis

IGF-1:

Insulin-like growth factor-1

IQR:

Interquartile ranges

ISS:

Idiopathic short stature

LefSe:

Linear discriminant analysis of effect size

NC group:

Control group

NMDS:

Nonmetric multidimensional scaling

PCoA:

Principal coordinate analysis

PCR:

Polymerase chain reaction

rhGH:

Recombinant human growth hormone

ROC:

Receiver operating characteristic

SCFA:

Short-chain fatty acids

TISS group:

Treated ISS group

UISS group:

Untreated ISS group

References

  1. Rogol AD, Hayden GF (2014) Etiologies and early diagnosis of short stature and growth failure in children and adolescents. J Pediatr 164:S1-14.e16. https://doi.org/10.1016/j.jpeds.2014.02.027

    Article  PubMed  Google Scholar 

  2. Buckway CK, Guevara-Aguirre J, Pratt KL, Burren CP, Rosenfeld RG (2001) The IGF-I generation test revisited: a marker of GH sensitivity. J Clin Endocrinol Metab 86:5176–5183. https://doi.org/10.1210/jcem.86.11.8019

    Article  CAS  PubMed  Google Scholar 

  3. Blair JC, Savage MO (2002) The GH-IGF-I axis in children with idiopathic short stature. Trends Endocrinol Metab 13:325–330. https://doi.org/10.1016/s1043-2760(02)00631-8

    Article  CAS  PubMed  Google Scholar 

  4. El Kholy M, Mella P, Rashad M, Buzi F, Meazza C, Zahra S, Elsedfy HH (2011) Growth hormone/IGF-I axis and growth hormone receptor mutations in idiopathic short stature. Horm Res Paediatr 76:300–306. https://doi.org/10.1159/000330191

    Article  CAS  PubMed  Google Scholar 

  5. Kumar A, Pal A, Kalaivani M, Gupta N, Jain V (2018) Etiology of short stature in Indian children and an assessment of the growth hormone-insulin-like growth factor axis in children with idiopathic short stature. J Pediatr Endocrinol Metab 31:1009–1017. https://doi.org/10.1515/jpem-2017-0352

    Article  CAS  PubMed  Google Scholar 

  6. Jensen EA, Young JA, Mathes SC, List EO, Carroll RK, Kuhn J, Onusko M, Kopchick JJ, Murphy ER, Berryman DE (2020) Crosstalk between the growth hormone/insulin-like growth factor-1 axis and the gut microbiome: A new frontier for microbial endocrinology. Growth Horm IGF Res 53–54:101333. https://doi.org/10.1016/j.ghir.2020.101333

  7. Jensen EA, Young JA, Jackson Z, Busken J, List EO, Carroll RK, Kopchick JJ, Murphy ER, Berryman DE (2020) Growth hormone deficiency and excess alter the gut microbiome in adult male mice. Endocrinology 161. https://doi.org/10.1210/endocr/bqaa026

  8. Cirillo F, Lazzeroni P, Sartori C, Street ME (2017) Inflammatory diseases and growth: effects on the GH-IGF axis and on growth plate. Int J Mol Sci 18. https://doi.org/10.3390/ijms18091878

  9. Yan J, Herzog JW, Tsang K, Brennan CA, Bower MA, Garrett WS, Sartor BR, Aliprantis AO, Charles JF (2016) Gut microbiota induce IGF-1 and promote bone formation and growth. Proc Natl Acad Sci USA 113:E7554-e7563. https://doi.org/10.1073/pnas.1607235113

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Kareem KY, Loh TC, Foo HL, Akit H, Samsudin AA (2016) Effects of dietary postbiotic and inulin on growth performance, IGF1 and GHR mRNA expression, faecal microbiota and volatile fatty acids in broilers. BMC Vet Res 12:163. https://doi.org/10.1186/s12917-016-0790-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Schwarzer M, Strigini M, Leulier F (2018) Gut Microbiota and Host Juvenile Growth. Calcif Tissue Int 102:387–405. https://doi.org/10.1007/s00223-017-0368-y

    Article  CAS  PubMed  Google Scholar 

  12. Li L, Chen L, Yang Y, Wang J, Guo L, An J, Ma X, Lu W, Xiao Y, Wang X, Dong Z (2022) Characteristics of Gut Microbiome and Its Metabolites, Short-Chain Fatty Acids, in Children With Idiopathic Short Stature. Front Endocrinol (Lausanne) 13:890200. https://doi.org/10.3389/fendo.2022.890200

  13. Cohen P, Rogol AD, Deal CL, Saenger P, Reiter EO, Ross JL, Chernausek SD, Savage MO, Wit JM (2008) Consensus statement on the diagnosis and treatment of children with idiopathic short stature: a summary of the Growth Hormone Research Society, the Lawson Wilkins Pediatric Endocrine Society, and the European Society for Paediatric Endocrinology Workshop. J Clin Endocrinol Metab 93:4210–4217. https://doi.org/10.1210/jc.2008-0509

    Article  CAS  PubMed  Google Scholar 

  14. Zong XN, Li H (2013) Construction of a new growth references for China based on urban Chinese children: comparison with the WHO growth standards. PLoS One 8. https://doi.org/10.1371/journal.pone.0059569

  15. Li H, Ji CY, Zong XN, Zhang YQ (2009) Height and weight standardized growth charts for Chinese children and adolescents aged 0 to 18 years. Zhonghua Er Ke Za Zhi 47:487–492

    PubMed  Google Scholar 

  16. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H et al (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852–857. https://doi.org/10.1038/s41587-019-0209-9

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13:581–583. https://doi.org/10.1038/nmeth.3869

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Gregory Caporaso J (2018) Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome 6:90. https://doi.org/10.1186/s40168-018-0470-z

    Article  PubMed  PubMed Central  Google Scholar 

  19. Natividad JM, Pinto-Sanchez MI, Galipeau HJ, Jury J, Jordana M, Reinisch W, Collins SM, Bercik P, Surette MG, Allen-Vercoe E, Verdu EF (2015) Ecobiotherapy Rich in Firmicutes Decreases Susceptibility to Colitis in a Humanized Gnotobiotic Mouse Model. Inflamm Bowel Dis 21:1883–1893. https://doi.org/10.1097/mib.0000000000000422

    Article  PubMed  Google Scholar 

  20. Durda-Masny M, Ciomborowska-Basheer J, Makałowska I, Szwed A (2022) The Mediating Role of the Gut Microbiota in the Physical Growth of Children. Life (Basel) 12. https://doi.org/10.3390/life12020152

  21. Shin SY, Kim S, Choi JW, Kang SB, Kim TO, Seo GS, Cha JM, Chun J, Jung Y, Im JP, Bang KB, Choi CH, Park SK, Park DI (2022) The Common and Unique Pattern of Microbiome Profiles among Saliva, Tissue, and Stool Samples in Patients with Crohn’s Disease. Microorganisms 10. https://doi.org/10.3390/microorganisms10071467

  22. Tett A, Pasolli E, Masetti G, Ercolini D, Segata N (2021) Prevotella diversity, niches and interactions with the human host. Nat Rev Microbiol 19:585–599. https://doi.org/10.1038/s41579-021-00559-y

    Article  CAS  PubMed  Google Scholar 

  23. Coker MO, Lebeaux RM, Hoen AG, Moroishi Y, Gilbert-Diamond D, Dade EF, Palys TJ, Madan JC, Karagas MR (2022) Metagenomic analysis reveals associations between salivary microbiota and body composition in early childhood. Sci Rep 12:13075. https://doi.org/10.1038/s41598-022-14668-y

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Huang C, Meng D, Li Y, Lu S, Yang W, Wu B, Chen S, Yang Z, Liu H (2023) Gut microbiota composition alteration analysis and functional categorization in children with growth hormone deficiency. Front Pediatr 11:1133258. https://doi.org/10.3389/fped.2023.1133258

    Article  PubMed  PubMed Central  Google Scholar 

  25. Gomes S, Teixeira-Guedes C, Silva E, Baltazar F, Preto A (2022) Colon microbiota modulation by dairy-derived diet: new strategy for prevention and treatment of colorectal cancer. Food Funct. https://doi.org/10.1039/d2fo01720b

    Article  PubMed  Google Scholar 

  26. Jia B, Zou Y, Han X, Bae JW, Jeon CO (2022) Gut microbiome-mediated mechanisms for reducing cholesterol levels: implications for ameliorating cardiovascular disease. Trends Microbiol. https://doi.org/10.1016/j.tim.2022.08.003

    Article  PubMed  Google Scholar 

  27. Derrien M, Turroni F, Ventura M, van Sinderen D (2022) Insights into endogenous Bifidobacterium species in the human gut microbiota during adulthood. Trends Microbiol. https://doi.org/10.1016/j.tim.2022.04.004

    Article  PubMed  Google Scholar 

  28. Aslam H, Marx W, Rocks T, Loughman A, Chandrasekaran V, Ruusunen A, Dawson SL, West M, Mullarkey E, Pasco JA, Jacka FN (2020) The effects of dairy and dairy derivatives on the gut microbiota: a systematic literature review. Gut Microbes 12:1799533. https://doi.org/10.1080/19490976.2020.1799533

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Bengmark S (2012) Nutrition of the critically ill - emphasis on liver and pancreas. Hepatobiliary Surg Nutr 1:25–52. https://doi.org/10.3978/j.issn.2304-3881.2012.10.14

    Article  PubMed  PubMed Central  Google Scholar 

  30. Mazziotti G, Lania AG, Canalis E (2022) Skeletal disorders associated with the growth hormone-insulin-like growth factor 1 axis. Nat Rev Endocrinol 18:353–365. https://doi.org/10.1038/s41574-022-00649-8

    Article  CAS  PubMed  Google Scholar 

  31. Yan J, Takakura A, Zandi-Nejad K, Charles JF (2018) Mechanisms of gut microbiota-mediated bone remodeling. Gut Microbes 9:84–92. https://doi.org/10.1080/19490976.2017.1371893

    Article  CAS  PubMed  Google Scholar 

  32. Wang JF, Fu SP, Li SN, Hu ZM, Xue WJ, Li ZQ, Huang BX, Lv QK, Liu JX, Wang W (2013) Short-chain fatty acids inhibit growth hormone and prolactin gene transcription via cAMP/PKA/CREB signaling pathway in dairy cow anterior pituitary cells. Int J Mol Sci 14:21474–21488. https://doi.org/10.3390/ijms141121474

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Rahat-Rozenbloom S, Fernandes J, Cheng J, Gloor GB, Wolever TM (2017) The acute effects of inulin and resistant starch on postprandial serum short-chain fatty acids and second-meal glycemic response in lean and overweight humans. Eur J Clin Nutr 71:227–233. https://doi.org/10.1038/ejcn.2016.248

    Article  CAS  PubMed  Google Scholar 

  34. Torres-Fuentes C, Golubeva AV, Zhdanov AV, Wallace S, Arboleya S, Papkovsky DB, Aidy SE, Ross P, Roy BL, Stanton C, Dinan TG, Cryan JF, Schellekens H (2019) Short-chain fatty acids and microbiota metabolites attenuate ghrelin receptor signaling. Faseb j 33:13546–13559. https://doi.org/10.1096/fj.201901433R

    Article  CAS  PubMed  Google Scholar 

  35. Ouni M, Castell AL, Rothenbuhler A, Linglart A, Bougnères P (2016) Higher methylation of the IGF1 P2 promoter is associated with idiopathic short stature. Clin Endocrinol (Oxf) 84:216–221. https://doi.org/10.1111/cen.12867

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We would like to thank Editage (www.editage.cn) for English language editing.

Author information

Authors and Affiliations

Authors

Contributions

Jing Miao and Panjian Lai participated in and approved the manuscript. Mizu Jiang and Yunguang Bao contributed to the project concept and design, analyzed the data, and wrote the first draft of the manuscript. Linqian Zhang, Kan Wang, Guoxing Fang, and Xiaobing Li performed the data acquisition and analysis. All the authors commented on previous versions the manuscript. All authors read and approved the final version.

Corresponding author

Correspondence to Yunguang Bao.

Ethics declarations

Ethics approval

This study was performed in line with the principles of the Declaration of Helsinki. Approval was granted by the Ethics Committee of Jinhua Hospital, Zhejiang University (2019-014-001).

Consent to participate

Written informed consent was obtained from the guardians.

Competing interests

The authors have no relevant financial or non-financial interests to disclose.

Additional information

Communicated by Gregorio Milani

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary Information

Below is the link to the electronic supplementary material.

Table S1:

The relative abundance of each bacterial at phylum, class, order, family and genus levels. (DOCX 63 KB)

Fig. S1

The sequence number distribution diagram. (TIF 491 KB)

Fig. S2

The quality scores of bases. (TIF 3860 KB)

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Miao, J., Lai, P., Wang, K. et al. Characteristics of intestinal microbiota in children with idiopathic short stature: a cross-sectional study. Eur J Pediatr 182, 4537–4546 (2023). https://doi.org/10.1007/s00431-023-05132-8

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00431-023-05132-8

Keywords

Navigation