Because accurate diagnosis of pertussis cannot be made by clinical signs and symptoms alone, there is a need for improved laboratory diagnosis of pertussis [17]. While several laboratory techniques exist for the identification of B. pertussis, namely, culture, serology and PCR, overall, several practical factors may adversely affect the sensitivity of its laboratory diagnosis. Delayed specimen collection, poor specimen collection techniques, specimen transport problems, and lab media contamination are but a few of the practical constraints often influencing the outcomes of the laboratory diagnosis of pertussis. Moreover, previous exposure to the organism, patient’s age, stage of disease, previous antibiotic administration, and immunization are other factors that may have a substantial impact on the sensitivity of the tests. Finally, limited access to diagnostic or laboratory methods, in both developed and developing countries, undoubtedly affects B. pertussis laboratory confirmation [8, 24].
Culture
B. pertussis is a fastidious gram-negative cocobacillus, and its isolation from nasopharyngeal secretions remains the gold standard for diagnosis. Culture requires collection of a posterior nasopharyngeal specimen with a dacron or calcium alginate swab. To increase the yield of positive cultures, specimens should be immediately plated onto selective Regan Lowe agar or Bordet Gengou medium, selective media that are seldom readily available in physician's offices because of their cost and short shelf-life [17, 24]. The main reasons for failure of bacterial growth in culture, from correctly collected and transported specimens, stem from bacterial and fungal contamination and the lack of fresh media [24]. Generally, 7–10 days are required to grow, isolate, and identify the organism, an obvious limitation of the culture method.
The timing of obtaining specimens for culture is also of paramount importance and greatly affects its yield. The proportion of patients testing positive for pertussis by culture is highest when the initial specimens are obtained early in the course of illness, i.e., during the early catarrhal phase of the illness when the organism is present in the nasopharynx in sufficient quantity. However, adults and adolescents often present late in the course of their illness, thereby greatly reducing the likelihood of culturing the organism [17, 24]. Studies also demonstrate that proportions of positive cultures decline in patients who have been previously immunized and undoubtedly in those in whom antibiotics have been started. Thus, given the limited “window of opportunity” for positive culture, it is important to stress that a negative culture does not exclude pertussis [16]. Finally, it is important to emphasize, that despite its low yield, culture should be attempted, as the bacterial isolates are needed for genotypic and phenotypic analysis.
PCR
The use of PCR for the diagnosis of pertussis is rapidly evolving as it provides a sensitive, rapid means for laboratory diagnosis in circumstances in which the probability of a positive culture is low [8, 17, 32, 35]. Notably, the CDC and World Health Organization (WHO) now include a positive PCR in their lab definition of pertussis [17]. While the sensitivity of PCR also decreases somewhat with the duration of cough and among previously immunized individuals, it is nevertheless a significantly more robust tool for diagnosis for those in the later stages of the disease or for those who have already received antibiotics [17, 35]. Specifically, in their 2005 consensus paper, the European Research Programme for Improved Pertussis Strain Characterization and Surveillance (EUpertstrain) state that the real-time PCR is more sensitive than culture for the detection of B. pertussis, especially after the first 3–4 weeks of coughing and after antibiotic therapy has been initiated [16, 27]. In a prospective study in which nasopharyngeal samples were obtained simultaneously for both PCR and culture, the identification of B. pertussis infections was nearly four-fold higher with PCR [8, 28]. Finally, PCR is an invaluable tool for the diagnosis of pertussis among young infants since the yield of culture is low and serology is problematic in this age group [1, 17].
As with culture, important factors for the successful application of PCR in the diagnosis of infection by Bordetella species include proper sample collection and preparation. For example, a Dacron swab with a fine flexible wire shaft, and not calcium alginate, is the recommended swab. After obtaining the nasopharyngeal sample, the swab should be shaken vigorously in saline solution, the swab discarded and the vial sealed for further processing [24]. Appropriate primer selection, amplification conditions, and controls are also essential for effective PCR testing. Primers have been derived from four chromosomal regions and common primers employed in PCR detection systems include IS481, IS1001 PTp1, and PTp2 [8, 24]. Inherent with the high sensitivity, false positive results are a well-recognized problem associated with the PCR diagnosis of pertussis and other respiratory illnesses. While at the present time, PCR is not routinely available and its methods need more standardization, optimization, and quality control, in the future, an internationally accepted standardized kit might be available, which would facilitate the expanded use of PCR for pertussis diagnosis [16, 35].
Serology
Natural infection with B. pertussis is followed by an increase in serum levels of IgA, IgM, and IgG antibodies to specific pertussis antigen whereas the primary immunization of children induces mainly IgM and IgG antibodies. During the past 15 years, ELISAs have constituted the mainstay of serologic diagnosis using specific B. pertussis protein as antigens, and the serologic diagnosis of pertussis is suspected with increases in IgA or IgG antibody titers to pertussis toxin (PT), filamentous hemmaglutinin (FHA), pertactin, fimbriae or sonicated whole organisms in two serum samples collected 2–4 weeks apart [24]. Notably, these antibody responses to FHA are not specific to B. pertussis, but also occur following other Bordetella species; moreover, these antibodies may be cross-reacting epitopes to other bacteria including H. influenzae and M. pneumoniae. Thus, the greatest sensitivity and specificity for the serological diagnosis of B. pertussis infection is by ELISA measurement of IgG and IgA antibodies to PT demonstrating at least a two-fold rise in titer between acute- and convalescent-phase sera [24].
Still, the main problem in the serologic diagnosis of B. pertussis by ELISA is the frequent delay in obtaining the acute-phase specimen. In individuals with re-infections, there is a rapid increase in titer such that if a “delayed” acute-phase sample is obtained, the titer is likely to have already peaked, thereby hampering the detection of the significant titer increase between the acute- and convalescent-phase serum samples [24]. Notably, for those individuals not recently immunized, a single-serum sample ELISA may circumvent the problem, as ill patients will have significantly higher ELISA titers than the geometric mean titers (GMT) of healthy controls [23–25]. With this in mind, although a rise in PT IgA is more suggestive of a recent antibody response, it is less consistent than a PT IgG rise; hence, in adolescents and adults, a single high value of IgG or IgA antibodies to PT suggests pertussis infection [17, 24, 35]. Indeed, de Melker et al. demonstrated that an IgG concentration to PT of at least 100 units/mL in a single serum sample was diagnostic of either a recent or active pertussis infection [10].
The serological diagnosis of pertussis among infants also has notable limitations. Some culture-positive patients, particularly infants younger than 3 months, do not develop measurable antibodies, a finding that calls into question the utility of even obtaining a serum specimen for serology in young infants [8].
In summary, despite the shortcomings of serology, a single-sample serology test can be a useful tool, particularly among older patients presenting late in the course of their illness when culture and PCR testing are negative.
Use of antibiotics in the treatment and prevention of pertussis
Antimicrobial agents administered early in the course of disease, i.e., during the catarrhal stage, may ameliorate the disease; although, after the cough is established antibiotics do not have a discernable effect on the course of the illness, but rather are recommended to limit the spread of organisms to other individuals [9].
Erythromycin, clarithromycin or azithromycin are now considered first-line agents for treatment (and prophylaxis) of pertussis in individuals 6 months of age or older (Table 1). The antibiotic choice for infants younger than 6 months of age, however, requires special attention. The FDA has not yet approved azithromycin or clarithromycin for use in infants younger than 6 months; however, the 2006 AAP endorsed Red Book lists azithromycin as the preferred macrolide for this age group because of the risk of idiopathic hypertrophic pyloric stenosis associated with erythromycin [9]. Notably however, there was a recent report of infantile hypertrophic pyloric stenosis among two young infants treated with azithromycin for pertussis [26].
Table 1 Recommended antimicrobial therapy and postexposure prophylaxis for pertussis in infants, children, adolescents, and adults [9]
Postexposure prophylaxis
The American Academy of Pediatrics’ 2006 Red Book recommends that chemoprophylaxis be administered to all household contacts and other close contacts, regardless of age and immunization status. The rationale behind this recommendation is that administration of chemoprophylaxis to asymptomatic contacts within 21 days of onset of cough in the index patient can limit secondary transmission [9]. Other countries like the United Kingdom limit the use of prophylaxis for the protection of only those with the greatest risk from pertussis, namely, young infants [11, 33]. Notably, an evidence-based review of literature on the use of erythromycin in preventing secondary transmission of pertussis to close contacts concluded that in countries where effective pertussis vaccines are in use, chemoprophyalxis should be limited to those most susceptible to the complications of pertussis (i.e., unimmunized or partially immunized infants) and to those individuals who come in close contact with the latter [11, 12]. Regardless of the policy, the agents, dose, and duration of prophylaxis are the same as for treatment of pertussis.