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Medical Microbiology and Immunology

, Volume 207, Issue 3–4, pp 201–210 | Cite as

Prevalence and genetic diversity of norovirus genogroup II in children less than 5 years of age with acute gastroenteritis in Tehran, Iran

  • Mahsa Farsi
  • Fatemeh Roodbari
  • Behrooz Nejati
  • Arash Arashkia
  • Somayeh Jalilvand
  • Alireza Nateghian
  • Aliakbar Rahbarimanesh
  • Sayed Mahdi Marashi
  • Zabihollah Shoja
Original Investigation

Abstract

Viral gastroenteritis is a major public health problem worldwide. In Iran, very limited studies have been performed with regard to the epidemiology of noroviruses. This study aimed to evaluate the prevalence and molecular epidemiology of GII noroviruses in hospitalized children less than 5 years of age with acute gastroenteritis (AGE). A total of 210 stool specimens were collected from Ali Asghar Children’s Hospital and Bahrami Children’s Hospital in Tehran, from June 2015 to June 2016. The samples were screened by real-time RT-PCR for genogroup II (GII). Positive samples were genotyped by semi-nested PCR followed by Sanger sequencing and phylogenetic analysis. Norovirus was identified in 36 (17.1%) of 210 specimens. Based on genetic analysis of RdRp and capsid sequences, the strains were clustered into eight RdRp–capsid genotypes: GII.P4–GII.4 Sydney_2012 (41.7%), GII.Pe–GII.4 Sydney_2012 (30.6%), GII.P21–GII.3 (13.9%), GII.P16–GII.4 Sydney_2012 (2.8%), GII.P16–GII.12 (2.8%), GII.P2–GII.4 Sydney_2012 (2.8%), GII.P7–GII.7 (2.8%) and GII.P2–GII.2 (2.8%). We determined several different co-circulating norovirus genotypes in children < 5 years of age with AGE in our hospital in Tehran, Iran. Continued molecular surveillance of noroviruses, including typing of both RdRp and capsid genes, is important for monitoring emerging strains in our continued efforts to reduce the overall burden of norovirus disease.

Keywords

Norovirus Gastroenteritis Genotyping RdRp Capsid 

Notes

Acknowledgements

We thank Ali Asghar and Bahrami Children’s Hospitals in Tehran for providing clinical samples.

Compliance with ethical standards

Conflict of interest

The authors declare no conflicting financial or other interests.

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Copyright information

© Springer-Verlag GmbH Germany, part of Springer Nature 2018

Authors and Affiliations

  • Mahsa Farsi
    • 1
  • Fatemeh Roodbari
    • 1
  • Behrooz Nejati
    • 1
  • Arash Arashkia
    • 2
  • Somayeh Jalilvand
    • 3
  • Alireza Nateghian
    • 4
  • Aliakbar Rahbarimanesh
    • 5
  • Sayed Mahdi Marashi
    • 3
  • Zabihollah Shoja
    • 2
  1. 1.Biology Department, Faculty of Basic SciencesUniversity of MazandaranBabolsarIran
  2. 2.Virology DepartmentPasteur Institute of IranTehranIran
  3. 3.Virology Department, School of Public HealthTehran University of Medical SciencesTehranIran
  4. 4.Ali-Asghar Children’s HospitalIran University of Medical SciencesTehranIran
  5. 5.Department of Pediatric Infectious Diseases, Bahrami Children HospitalTehran University of Medical SciencesTehranIran

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