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Pyramiding dsRNAs increases phytonematode tolerance in cotton plants

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Abstract

Main conclusion

Host-derived suppression of nematode essential genes decreases reproduction of Meloidogyne incognita in cotton.

Abstract

Root-knot nematodes (RKN) represent one of the most damaging plant-parasitic nematode genera worldwide. RNAi-mediated suppression of essential nematode genes provides a novel biotechnological strategy for the development of sustainable pest-control methods. Here, we used a Host Induced Gene Silencing (HIGS) approach by stacking dsRNA sequences into a T-DNA construct to target three essential RKN genes: cysteine protease (Mi-cpl), isocitrate lyase (Mi-icl), and splicing factor (Mi-sf), called dsMinc1, driven by the pUceS8.3 constitutive soybean promoter. Transgenic dsMinc1-T4 plants infected with Meloidogyne incognita showed a significant reduction in gall formation (57–64%) and egg masses production (58–67%), as well as in the estimated reproduction factor (60–78%), compared with the susceptible non-transgenic cultivar. Galls of the RNAi lines are smaller than the wild-type (WT) plants, whose root systems exhibited multiple well-developed root swellings. Transcript levels of the three RKN-targeted genes decreased 13- to 40-fold in nematodes from transgenic cotton galls, compared with those from control WT galls. Finally, the development of non-feeding males in transgenic plants was 2–6 times higher than in WT plants, indicating a stressful environment for nematode development after RKN gene silencing. Data strongly support that HIGS of essential RKN genes is an effective strategy to improve cotton plant tolerance. This study presents the first application of dsRNA sequences to target multiple genes to promote M. incognita tolerance in cotton without phenotypic penalty in transgenic plants.

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Availability of data and materials

The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.

Abbreviations

DAI:

Days after inoculation

GC:

Giant cell

HIGS:

Host Induced Gene Silencing

Mi-cpl :

Cysteine protease

Mi-icl :

Isocitrate lyase

Mi-sf :

Splicing factor

NG:

Number of galls

PDK:

Pyruvate dehydrogenase kinase

ppJ2:

Second-stage pre-parasitic juveniles

RKN:

Root-knot nematodes

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Acknowledgements

The authors gratefully acknowledge the support of EMBRAPA, UCB, CNPq, CAPES, INCT PlantStress Biotech, and FAPDF. We thank the Mato-Grossense Cotton Institute (IMAmt) for its partnership and support in the execution of this project. Authors also thank Josue Inácio Lemos and Marcelo Broillo Paganella for technical support with plant transformation and plant management in the greenhouse.

Funding

PLRS thanks to the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) for the master’s research fellowship and JPAS thanks to the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for the undergraduation research fellowship. This work was supported by grants from EMBRAPA, UCB, CAPES, INCT-CNPq, FAP-DF, and IMAmt.

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Correspondence to Maria F. Grossi-de-Sa.

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The authors have no conflicts of interest to declare that are relevant to the content of this manuscript. The authors have no relevant financial or non-financial interests to disclose.

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Communicated by Dorothea Bartels.

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425_2021_3776_MOESM1_ESM.tiff

Fig. S1 Schematic representation of the dsMinc1 expression cassette (10,781 bp) used for cotton transformation. The binary vector pCambia3300 was used as a backbone for the RNAi construct, containing in tandem fragments of sense and antisense cDNA sequences of M. incognita genes Mi-cpl, Mi-icl, and Mi-sf under the control of pUceS8.3 promoter and Nos terminator (Nos-t). Selection markers based on herbicide-resistance comprise the acetohydroxyacid synthase (ahas) gene, controlled by its promoter and terminator (ahas-t), and bialaphos resistance gene (bar), controlled by the 35S RNA double promoter of cauliflower mosaic virus (p35S 2x) and Nos-t. RB, right border; LB, left border (TIFF 185 KB)

425_2021_3776_MOESM2_ESM.tif

Fig. S2 Molecular characterization of T0 independent events (a) and in their respective T4-dsMinc1 cotton plants selected by PCR: amplification of PDK fragments (279 bp). b, c, d, and e dsMinc1-10 lines; f, g, h, and i dsMinc1-20 lines; j, k, and l dsMinc1-64 lines. Lanes with numbers: DNA samples from different T4 cotton events. WT used as a negative control. (-) water used as a negative control for the PCR reaction. (+): positive control - dsMinc1 expression cassette; X, empty well; M, ladder 1kb Plus (Invitrogen). In red, PCR-positive plants; in black, PCR-negative plants (TIF 642 KB)

425_2021_3776_MOESM3_ESM.tif

Fig. S3 Relative expression of Mi-cpl, Mi-icl, and Mi-sf genes in M. incognita from galls in T4-GM cotton events (dsMinc1-10, dsMinc1-20, and dsMinc1-64) and WT plants. Relative expression of a Mi-cpl, b Mi-icl and c Mi-sf genes. Elongation factor (ef1) and actin (act) were used as reference genes for M. incognita. The expression of Mi-cpl, Mi-icl and Mi-sf was quantified by the 2-ΔCt method. Error bars indicate the standard errors of the mean (TIF 875 KB)

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Lisei-de-Sá, M.E., Rodrigues-Silva, P.L., Morgante, C.V. et al. Pyramiding dsRNAs increases phytonematode tolerance in cotton plants. Planta 254, 121 (2021). https://doi.org/10.1007/s00425-021-03776-0

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  • DOI: https://doi.org/10.1007/s00425-021-03776-0

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