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The chloroplast NifS-like protein of Arabidopsis thaliana is required for iron–sulfur cluster formation in ferredoxin

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Abstract

Plastids are known to be able to synthesize their own iron–sulfur clusters, but the biochemical machinery responsible for this process is not known. In this study it is investigated whether CpNifS, the chloroplastic NifS-like cysteine desulfurase of Arabidopsis thaliana (L.) Heynh. is responsible for the release of sulfur from cysteine for the biogenesis of iron–sulfur (Fe–S) clusters in chloroplasts. Using an in vitro reconstitution assay it was found that purified CpNifS was sufficient for Fe–S cluster formation in ferredoxin in the presence of cysteine and a ferrous iron salt. Antibody-depletion experiments using stromal extract showed that CpNifS is also essential for the Fe–S cluster formation activity of chloroplast stroma. The activity of CpNifS in the stroma was 50- to 80-fold higher than that of purified CpNifS on a per-protein basis, indicating that other stromal factors cooperate in Fe–S cluster formation. When stromal extract was separated on a gel-filtration column, most of the CpNifS eluted as a dimer of 86 kDa, but a minor fraction of the stromal CpNifS eluted at a molecular weight of approx. 600 kDa, suggesting the presence of a multi-protein complex. The possible nature of the interacting proteins is discussed.

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Abbreviations

CpNifS :

Chloroplast NifS-like protein

fd :

Ferredoxin

PLP :

Pyridoxal-5′-phosphate

DTT :

Dithiothreitol

Fe–S :

Iron–sulfur

References

  • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254

    Article  CAS  PubMed  Google Scholar 

  • Frazzon J, Fick JR, Dean DR (2002) Biosynthesis of iron–sulphur clusters is a complex and highly conserved process. Biochem Soc Trans 30:680–685

    Article  CAS  PubMed  Google Scholar 

  • Kato S, Mihara H, Kurihara T, Yoshimura T, Esaki N (2000) Gene cloning, purification, and characterization of two cyanobacterial NifS homologs driving iron–sulfur cluster formation. Biosci Biotechnol Biochem 64:2412–2419

    CAS  PubMed  Google Scholar 

  • Kispal G, Csere P, Prohl C, Lill R (1999) The mitochondrial proteins Atm1p and Nfs1p are essential for biogenesis of cytosolic Fe/S proteins. EMBO J 18:3981–3989

    Article  CAS  PubMed  Google Scholar 

  • Kushnir S, Babiychuk E, Storozhenko S, Davey MW, Papenbrock J, De Rycke R, Engler G, Stephan UW, Lange H, Kispal G, Lill R, Van Montagu M (2001) A mutation of the mitochondrial ABC transporter Sta1 leads to dwarfism and chlorosis in the Arabidopsis mutant starik. Plant Cell 13:89–100

    Article  CAS  PubMed  Google Scholar 

  • Leon S, Touraine B, Briat JF, Lobreaux S (2002) The AtNFS2 gene from Arabidopsis thaliana encodes a NifS-like plastidial cysteine desulphurase. Biochem J 366:557–564

    Article  CAS  PubMed  Google Scholar 

  • Leon S, Touraine B, Ribot C, Briat JF, Loberaux S (2003) Iron–sulphur cluster assembly in plants: distinct NFU proteins in mitochondria and plastids from Arabidopsis thaliana. Biochem J 371:823–830

    Article  CAS  PubMed  Google Scholar 

  • Li HM, Theg SM, Bauerle CM, Keegstra K (1990) Metal-ion-center assembly of ferredoxin and plastocyanin in isolated chloroplasts. Proc Natl Acad Sci USA 87:6748–6752

    CAS  PubMed  Google Scholar 

  • Lill R, Kispal G (2000) Maturation of cellular Fe–S proteins: an essential function of mitochondria. Trends Biochem Sci 25:352–356

    Article  CAS  PubMed  Google Scholar 

  • Loiseau L, Ollagnier-de-Choudens S, Nachin L, Fontecave M, Barras F (2003) Biogenesis of Fe–S cluster by the bacterial Suf system: SufS and SufE form a new type of cysteine desulfurase. J Biol Chem 278:38352–38359

    Article  CAS  PubMed  Google Scholar 

  • Merchant S, Dreyfuss BW (1998) Posttranslational assembly of photosynthetic metalloproteins. Annu Rev Plant Physiol Plant Mol Biol 49:25–51

    Article  CAS  PubMed  Google Scholar 

  • Mihara H, Esaki N (2002) Bacterial cysteine desulfurases: their function and mechanisms. Appl Microbiol Biotechnol 60:12–23

    Article  CAS  PubMed  Google Scholar 

  • Mihara H, Kurihara T, Yoshimura T, Soda K, Esaki N (1997) Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme. J Biol Chem 272:22417–22424

    Article  CAS  PubMed  Google Scholar 

  • Mihara H, Kurihara T, Yoshimura T, Esaki N (2000) Kinetic and mutational studies of three NifS homologs from Escherichia coli: mechanistic difference between l-cysteine desulfurase and l-selenocysteine lyase reactions. J Biochem Tokyo 127:559–567

    CAS  PubMed  Google Scholar 

  • Ollagnier-de-Choudens S, Lascoux D, Loiseau L, Barras F, Forest E, Fontecave M (2003) Mechanistic studies of the SufS-SufE cysteine desulfurase: evidence for sulfur transfer from SufS to SufE. FEBS Lett 555:263–267

    Article  PubMed  Google Scholar 

  • Outten FW, Wood MJ, Munoz FM, Storz G (2003) The SufE protein and the SufBCD complex enhance SufS cysteine desulfurase activity as part of a sulfur transfer pathway for Fe–S cluster assembly in Escherichia coli. J Biol Chem 278:45713–45719

    Article  PubMed  Google Scholar 

  • Outten FW, Djaman O, Storz G (2004) The Suf operon requirement for Fe–S cluster assembly during iron starvation in Escherichia coli. Mol Microbiol 52:861–872

    Article  CAS  PubMed  Google Scholar 

  • Pilon M, Rietveld AG, Weisbeek PJ, Kruijff B (1992) Secondary structure and folding of a functional chloroplast precursor protein. J Biol Chem 267:19907–19913

    CAS  PubMed  Google Scholar 

  • Pilon M, America T, van’t Hof R, de Kruijff B, Weisbeek P (1995) Protein translocation into chloroplasts. In: Rothman SS (ed) Advances in molecular and cell biology. Membrane protein transport. JAI Press, Greenwich, vol 4, pp 229–255

  • Pilon-Smits EAH, Garifullina G, Abdel-Ghany S, Kato S, Mihara H, Hale K, Burkhead J, Esaki N, Kurihara T, Pilon M (2002) Characterization of a NifS-like chloroplast protein from Arabidopsis: implications for its role in sulfur and selenium metabolism. Plant Physiol 130:1309–1318

    Article  CAS  PubMed  Google Scholar 

  • Raven JA, Evans MCW, Korb RE (1999) The role of trace metals in photosynthetic electron transport in O2-evolving organisms. Photosynth Res 60:111–149

    Article  CAS  Google Scholar 

  • Rensink WA, Pilon M, Weisbeek P (1998) Domains of a transit sequence required for in vivo import in Arabidopsis chloroplasts. Plant Physiol 118:691–699

    Article  CAS  PubMed  Google Scholar 

  • Takahashi Y, Tokumoto U (2002) A third bacterial system for the assembly of iron–sulfur clusters with homologs in archaea and plastids. J Biol Chem 277:28380–28383

    Article  CAS  PubMed  Google Scholar 

  • Takahashi Y, Mitsui A, Hase T, Matsubara H (1986) Formation of the iron sulfur cluster of ferredoxin in isolated chloroplasts. Proc Natl Acad Sci USA 83:2434–2437

    CAS  Google Scholar 

  • Takahashi Y, Mitsui A, Matsubara H (1990) Formation of the Fe–S cluster of ferredoxin in lysed spinach chloroplasts. Plant Physiol 95:97–103

    Google Scholar 

  • Yabe T, Morimoto K, Kikuchi S, Nishio K, Terashima I, Nakai M (2004) The Arabidopsis chloroplastic NifU-like protein CnfU, which can act as an iron–sulfur cluster scaffold protein, is required for biogenesis of ferredoxin and photosystem I. Plant Cell 16:993–1007

    Article  CAS  PubMed  Google Scholar 

  • Yocum CF (1982) Purification of ferredoxin and plastocyanin. In: Edelman M, Hallick RB, Chua N-H (eds) Methods in chloroplast molecular biology. Elsevier/N. Holland, Amsterdam, pp 973–981

  • Zheng L, White RH, Cash VL, Jack RF, Dean DR (1993) Cysteine desulfurase activity indicates a role for NIFS in metallocluster biosynthesis. Proc Natl Acad Sci USA 90:2754–2758

    CAS  PubMed  Google Scholar 

Download references

Acknowledgement

This work was supported by USDA–NRI Grant # 2003–35318–13758 to E.A.H.P.S. and M.P.

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Correspondence to Marinus Pilon.

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Ye, H., Garifullina, G.F., Abdel-Ghany, S.E. et al. The chloroplast NifS-like protein of Arabidopsis thaliana is required for iron–sulfur cluster formation in ferredoxin. Planta 220, 602–608 (2005). https://doi.org/10.1007/s00425-004-1388-1

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