Skip to main content
Log in

Validation of an easily applicable three-dimensional immunohistochemical imaging method for a mouse brain using conventional confocal microscopy

  • Short Communication
  • Published:
Histochemistry and Cell Biology Aims and scope Submit manuscript

Abstract

Histological analysis has been largely confined to two-dimensional analysis of thin tissue sections, hampering detailed understanding of three-dimensional cellular distribution in biological tissues. Tissue optical clearing methods enable three-dimensional histological analysis by rendering tissues transparent and suitable for microscopic detection of the fluorescent signals inside. Despite their great potential in histological research, the tissue clearing methods are not readily accessible to many researchers because of hazardous chemicals, complicated protocols and advanced microscopy. Furthermore, poor antibody penetration represents an additional major obstacle when performing three-dimensional immunohistochemical studies. Here, we have examined tissue optical clearing of a mouse brain slice by a non-hazardous aqueous solution, ScaleA2. We modified the ScaleA2 solution by increasing the concentration of detergent. A simple immersion in the modified ScaleA2 solution alone enabled highly intense and uniform immunolabeling into deep tissues in three-dimensional immunostaining. Conventional confocal microscopy could image three-dimensional immunostaining of vasculature and astrocytes with fine processes to 1 mm imaging depth. Collectively, our technically straightforward clearing method will facilitate the common application of three-dimensional immunohistochemical analysis in many research fields including neuroscience, expanding our understanding of the detailed spatial cellular distribution underlying the physiology and pathology.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

References

  • Chung K, Wallace J, Kim SY, Kalyanasundaram S, Andalman AS, Davidson TJ, Mirzabekov JJ, Zalocusky KA, Mattis J, Denisin AK, Pak S, Bernstein H, Ramakrishnan C, Grosenick L, Gradinaru V, Deisseroth K (2013) Structural and molecular interrogation of intact biological systems. Nature 497(7449):332–337. doi:10.1038/nature12107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Debus E, Weber K, Osborn M (1983) Monoclonal antibodies specific for glial fibrillary acidic (GFA) protein and for each of the neurofilament triplet polypeptides. Differentiation 25(2):193–203

    CAS  PubMed  Google Scholar 

  • Hama H, Kurokawa H, Kawano H, Ando R, Shimogori T, Noda H, Fukami K, Sakaue-Sawano A, Miyawaki A (2011) Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain. Nat Neurosci 14(11):1481–1488. doi:10.1038/nn.2928

    Article  CAS  PubMed  Google Scholar 

  • Hama H, Hioki H, Namiki K, Hoshida T, Kurokawa H, Ishidate F, Kaneko T, Akagi T, Saito T, Saido T, Miyawaki A (2015) ScaleS: an optical clearing palette for biological imaging. Nat Neurosci 18(10):1518–1529. doi:10.1038/nn.4107

    Article  CAS  PubMed  Google Scholar 

  • Ke MT, Fujimoto S, Imai T (2013) SeeDB: a simple and morphology-preserving optical clearing agent for neuronal circuit reconstruction. Nat Neurosci 16(8):1154–1161. doi:10.1038/nn.3447

    Article  CAS  PubMed  Google Scholar 

  • Kubota SI, Takahashi K, Nishida J, Morishita Y, Ehata S, Tainaka K, Miyazono K, Ueda HR (2017) Whole-body profiling of cancer metastasis with single-cell resolution. Cell Rep 20(1):236–250. doi:10.1016/j.celrep.2017.06.010

    Article  CAS  PubMed  Google Scholar 

  • Lee E, Choi J, Jo Y, Kim JY, Jang YJ, Lee HM, Kim SY, Lee HJ, Cho K, Jung N, Hur EM, Jeong SJ, Moon C, Choe Y, Rhyu IJ, Kim H, Sun W (2016) ACT-PRESTO: rapid and consistent tissue clearing and labeling method for 3-dimensional (3D) imaging. Sci Rep 6:18631. doi:10.1038/srep18631

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mathiisen TM, Lehre KP, Danbolt NC, Ottersen OP (2010) The perivascular astroglial sheath provides a complete covering of the brain microvessels: an electron microscopic 3D reconstruction. Glia 58(9):1094–1103. doi:10.1002/glia.20990

    Article  PubMed  Google Scholar 

  • Richardson DS, Lichtman JW (2015) Clarifying tissue clearing. Cell 162(2):246–257. doi:10.1016/j.cell.2015.06.067

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Robertson RT, Levine ST, Haynes SM, Gutierrez P, Baratta JL, Tan Z, Longmuir KJ (2015) Use of labeled tomato lectin for imaging vasculature structures. Histochem Cell Biol 143(2):225–234. doi:10.1007/s00418-014-1301-3

    Article  CAS  PubMed  Google Scholar 

  • Susaki EA, Ueda HR (2016) Whole-body and whole-organ clearing and imaging techniques with single-cell resolution: toward organism-level systems biology in mammals cell. Chem Biol 23(1):137–157. doi:10.1016/j.chembiol.2015.11.009

    CAS  Google Scholar 

  • Susaki EA, Tainaka K, Perrin D, Kishino F, Tawara T, Watanabe TM, Yokoyama C, Onoe H, Eguchi M, Yamaguchi S, Abe T, Kiyonari H, Shimizu Y, Miyawaki A, Yokota H, Ueda HR (2014) Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis. Cell 157(3):726–739. doi:10.1016/j.cell.2014.03.042

    Article  CAS  PubMed  Google Scholar 

  • Tainaka K, Kubota SI, Suyama TQ, Susaki EA, Perrin D, Ukai-Tadenuma M, Ukai H, Ueda HR (2014) Whole-body imaging with single-cell resolution by tissue decolorization. Cell 159(4):911–924. doi:10.1016/j.cell.2014.10.034

    Article  CAS  PubMed  Google Scholar 

  • Tomer R, Ye L, Hsueh B, Deisseroth K (2014) Advanced CLARITY for rapid and high-resolution imaging of intact tissues. Nat Protoc 9(7):1682–1697. doi:10.1038/nprot.2014.123

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wan Y, Otsuna H, Chien CB, Hansen C (2012) FluoRender: an application of 2D image space methods for 3D and 4D confocal microscopy data visualization in neurobiology research. In: IEEE Pac Vis Symp 201–208

  • Wolf ME, Zigmond MJ, Kapatos G (1989) Tyrosine hydroxylase content of residual striatal dopamine nerve terminals following 6-hydroxydopamine administration: a flow cytometric study. J Neurochem 53(3):879–885

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tetsuhiro Kakimoto.

Ethics declarations

Conflict of interest

The author declares that he has no conflict of interest.

Ethical approval

All applicable institutional guidelines for the care and use of animals were followed. All procedures performed in studies involving animals were in accordance with the ethical standards of the institution.

Electronic supplementary material

Below is the link to the electronic supplementary material.

418_2017_1614_MOESM1_ESM.tif

Online Resource 1 The cross-sectional images of a mouse brain slice without tissue clearing, followed by immunostaining with anti-GFAP antibody (cyan) and nuclear staining dye SYTO16 (green). Two-mm-thick mouse brain coronal slice was immunostained and excised at 2 mm inside from the surface to study antibody penetration at the cross-section by confocal laser scanning microscopy with a 10x objective lens. Less immunolabeling of GFAP was detected especially in corpus callosum. The x-axis represents the tissue depth. CC: corpus callosum. Scale bar: 200 μm. Supplementary material 1 (TIFF 3211 kb)

418_2017_1614_MOESM2_ESM.mp4

Online Resource 2 Animation (rotation and zooming in) of 3D image in mouse hippocampus. A mouse brain slice cleared with ScaleA2-T followed by immunostaining with anti-GFAP antibody (cyan, astrocytes), tomato lectin (red, blood vessels) and SYTO16 (green, nuclei) was imaged three-dimensionally by confocal microscopy with a 10x objective lens to 1 mm imaging depth (Fig. 3). Scale bar: 200 μm. Supplementary material 2 (MP4 7820 kb)

418_2017_1614_MOESM3_ESM.mp4

Online Resource 3 Animation (rotation and zooming in) of higher magnified 3D image in mouse hippocampus. A mouse brain slice cleared with ScaleA2-T followed by immunostaining with anti-GFAP antibody (cyan, astrocytes), tomato lectin (red, blood vessels) and SYTO16 (green, nuclei) was imaged three-dimensionally by confocal microscopy with a 20x objective lens to 400 μm imaging depth (Fig. 4). Scale bar: 50 μm. Supplementary material 3 (MP4 7668 kb)

418_2017_1614_MOESM4_ESM.mp4

Online Resource 4 Animation (rotation) of 3D image in mouse substantia nigra. A mouse brain slice cleared with ScaleA2-T followed by immunostaining with anti-TH antibody (red, dopaminergic neurons) and SYTO16 (green, nuclei) was imaged three-dimensionally by confocal microscopy with a 10x objective lens to 550 μm imaging depth (Fig. 5). Scale bar: 200 μm. Supplementary material 4 (MP4 1473 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Kakimoto, T. Validation of an easily applicable three-dimensional immunohistochemical imaging method for a mouse brain using conventional confocal microscopy. Histochem Cell Biol 149, 97–103 (2018). https://doi.org/10.1007/s00418-017-1614-0

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00418-017-1614-0

Keywords

Navigation