International Journal of Legal Medicine

, Volume 132, Issue 4, pp 1087–1090 | Cite as

Paternal lineage affinity of the Malay subethnic and Orang Asli populations in Peninsular Malaysia

  • SyedHassan SharifahNany RahayuKarmilla
  • Alwi R. Aedrianee
  • Abd Rashid Nur Haslindawaty
  • Abdullah Nur Azeelah
  • Sundararajulu Panneerchelvam
  • Mohd Nor Norazmi
  • Zainuddin ZafarinaEmail author
Population Data


Peninsular Malaysia is populated by the Malays, Chinese, Indians, and Orang Asli. We have analyzed 17 Y-STRs loci for 243 randomly unrelated individuals, which include 153 Malays (7 Acheh, 13 Champa, 11 Rawa, 9 Kedah, 23 Minang, 15 Bugis, 43 Kelantan, 14 Jawa, and 18 Bugis) and 90 Orang Asli [54 Semang (16 Kensiu, 13 Lanoh, 25 Bateq); 30 Senoi (21 Semai, 9 Che Wong); and 6 Proto-Malay (6 Orang Kanaq)] from selected settlements in Peninsular Malaysia using the AmpFlSTR Yfiler™ kit (Applied Biosystems™). The overall haplotype diversity is 0.9966, i.e., 0.9984 for the Malays and 0.9793 for the Orang Asli. A total of 158 haplotypes (65.02%) were individually unique. The p value and pairwise Rst analysis was calculated to show the genetic structure of the samples with other world populations (from YHRD website). Based on the Y-STR data, Champa, Acheh, Kedah, Minang, and Kelantan are clustered together. Lanoh and Kensiu (Semang) are very closely related, suggesting similar paternal ancestry. Jawa Malays and Indonesian Java, plus the Bugis Malays and Australian Aborigines shared high degree of paternal lineage affinity. This study presents data for very precious relict groups, who are the earliest inhabitants of Peninsular Malaysia.


Y-STR Malay Orang Asli Peninsular Malaysia 



The authors acknowledge the Department of Orang Asli Development (JAKOA), Ministry of Higher Education Malaysia and Universiti Sains Malaysia (Long-Term Research Grant Scheme: 304/PPSK/6150115/U132) (Orang Asli samples), and FRGS Top Down 203/PPSK/ 249 6171005 (Malay samples).

Compliance with ethical standards

Informed consents were obtained from each participant before the blood samples were collected. Ethical approvals were obtained from Universiti Teknologi MARA and Universiti Sains Malaysia Human Ethics Committee (FWA Reg. No: 00007718; IRB Reg. No: 00004494) with Ref. No: USMKK/PPPJEPeM [254.4.129/].

Supplementary material

414_2017_1697_MOESM1_ESM.pdf (199 kb)
ESM 1 (PDF 199 kb)


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Copyright information

© Springer-Verlag GmbH Germany 2017

Authors and Affiliations

  • SyedHassan SharifahNany RahayuKarmilla
    • 1
  • Alwi R. Aedrianee
    • 2
  • Abd Rashid Nur Haslindawaty
    • 1
  • Abdullah Nur Azeelah
    • 1
  • Sundararajulu Panneerchelvam
    • 1
  • Mohd Nor Norazmi
    • 1
  • Zainuddin Zafarina
    • 1
    • 3
    Email author
  1. 1.Human Identification/DNA Unit, School of Health SciencesUniversiti Sains Malaysia, Health CampusKubang KerianMalaysia
  2. 2.Department of Chemistry MalaysiaJohor BahruMalaysia
  3. 3.Analytical Biochemistry Research Centre (ABrC)Universiti Sains MalaysiaUSM PenangMalaysia

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