Abstract
Horse mtDNA profiling can be useful in forensic work investigating degraded samples, hair shafts or highly dilute samples. Degraded DNA often does not allow sequencing of fragments longer than 200 nucleotides. In this study we therefore search for the most discriminatory sections within the hypervariable horse mtDNA control region. Among a random sample of 39 horses, 32 different sequences were identified in a stretch of 921 nucleotides. The sequences were assigned to the published mtDNA types A–G, and to a newly labelled minor type H. The random match probability within the analysed samples is 3.61%, and the average pairwise sequence difference is 15 nucleotides. In a “sliding window” analysis of 200-nucleotide sections of the mtDNA control region, we find that the known repetitive central motif divides the mtDNA control region into a highly diverse segment and a markedly less discriminatory segment.
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References
Bowling AT, Del Valle A, Bowling M (2000) A pedigree-based study of mitochondrial D-loop DNA sequence variation among Arabian horses. Anim Genet 31:1–7
Wolstenholme DR (1992) Genetic novelties in mitochondrial genomes of multicellular animals. Curr Opin Genet Dev 2:918–925
Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767–1780
Xu X, Arnason U (1994) The complete mitochondrial DNA sequence of the horse, Equus caballus: extensive heteroplasmy of the control region. Gene 148:357–362
Cooper JE, Cooper ME (2008) Forensic veterinary medicine: a rapidly evolving discipline. Forensic Sci Med Pathol 4:75–82
Eichmann C, Parson W (2007) Molecular characterization of the canine mitochondrial DNA control region for forensic applications. Int J Leg Med 121:411–416
Imaizumi K, Akutsu T, Miyasaka S, Yoshino M (2007) Development of species identification tests targeting the 16 S ribosomal RNA coding region in mitochondrial DNA. Int J Leg Med 121:184–191
Nakamura H, Muro T, Imamura S, Yuasa I (2009) Forensic species identification based on size variation of mitochondrial DNA hypervariable regions. Int J Leg Med 123:177–184
Schneider PM, Seo Y, Rittner C (1999) Forensic mtDNA hair analysis excludes a dog from having caused a traffic accident. Int J Leg Med 112:315–316
Tsuji A, Ishiko A, Kimura H, Nurimoto M, Kudo K, Ikeda N (2008) Unusual death of a baby: a dog attack and confirmation using human and canine STRs. Int J Leg Med 122:59–62
Deutsche Reiterliche Vereinigung (2008) Jahresbericht 2008 der Deutschen Reiterlichen Vereinigung e.V. Bundesverband für Pferdesport und Pferdezucht, Warendorf, p 425
Schneider PM, Bender K, Mayr WR, Parson W, Hoste B, Decorte R, Cordonnier J, Vanek D, Morling N, Karjalainen M, Marie-Paule Carlotti C, Sabatier M, Hohoff C, Schmitter H, Pflug W, Wenzel R, Patzelt D, Lessig R, Dobrowolski P, O’Donnell G, Garafano L, Dobosz M, De Knijff P, Mevag B, Pawlowski R, Gusmão L, Conceicao Vide M, Alonso Alonso A, García Fernández O, Sanz Nicolás P, Kihlgreen A, Bär W, Meier V, Teyssier A, Coquoz R, Brandt C, Germann U, Gill P, Hallett J, Greenhalgh M (2004) STR analysis of artificially degraded DNA—results of a collaborative European exercise. Forensic Sci Int 139:123–134
Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, Pääbo S (2009) The Neandertal genome and ancient DNA authenticity. EMBO J 28:2494–2502
Allen M, Engström AS, Meyers S, Handt O, Saldeen T, von Haeseler A, Pääbo S, Gyllensten U (1998) Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: sensitivity and matching probabilities. J Forensic Sci 43:453–464
Jansen T, Forster P, Levine MA, Oelke H, Hurles M, Renfrew C, Weber J, Olek K (2002) Mitochondrial DNA and the origins of the domestic horse. Proc Natl Acad Sci USA 99:10905–10910
McGahern AM, Edwards CJ, Bower MA, Heffernan A, Park SD, Brophy PO, Bradley DG, MacHugh DE, Hill EW (2006) Mitochondrial DNA sequence diversity in extant Irish horse populations and in ancient horses. Anim Genet 37:498–502
Vilà C, Leonard JA, Götherstöm A, Marklund S, Sandberg K, Lindén K, Wayne RK, Ellegren H (2001) Widespread origins of domestic horse lineages. Science 291:474–477
Acknowledgements
The authors wish to thank Piotr Miskowicz for providing Eurasian horse samples and Doug Stephens from the National Equine Database Ltd (UK) for information on the UK horse population. This work was performed by SG in partial fulfilment of the requirements for the doctoral degree.
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Susan M.R. Gurney and Sandra Schneider contributed equally to this work.
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M.R. Gurney, S., Schneider, S., Pflugradt, R. et al. Developing equine mtDNA profiling for forensic application. Int J Legal Med 124, 617–622 (2010). https://doi.org/10.1007/s00414-010-0506-9
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DOI: https://doi.org/10.1007/s00414-010-0506-9