Alexandrov A, Chernyakov I, Gu W, Hiley SL, Hughes TR, Grayhack EJ, Phizicky EM (2006) Rapid tRNA decay can result from lack of nonessential modifications. Mol Cell 21:87–96
Article
CAS
PubMed
Google Scholar
Bachman KE, Rountree MR, Baylin SB (2001) Dnmt3a and Dnmt3b are transcriptional repressors that exhibit unique localization properties to heterochromatin. J Biol Chem 276:32282–32287
Article
CAS
PubMed
Google Scholar
Banerjee S, Fisher O, Lohia A, Ankri S (2005) Entamoeba histolytica DNA methyltransferase (Ehmeth) is a nuclear matrix protein that binds EhMRS2, a DNA that includes a scaffold/matrix attachment region (S/MAR). Mol Biochem Parasitol 139:91–97
Article
CAS
PubMed
Google Scholar
Dong A, Yoder JA, Zhang X, Zhou L, Bestor TH, Cheng X (2001) Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA. Nucleic Acids Res 29:439–448
Article
CAS
PubMed
Google Scholar
Easwaran HP, Schermelleh L, Leonhardt H, Cardoso MC (2004) Replication-independent chromatin loading of Dnmt1 during G2 and M phases. EMBO Rep 5:1181–1186
Article
CAS
PubMed
Google Scholar
Esteller M (2008) Epigenetics in cancer. N Engl J Med 358:1148–1159
Article
CAS
PubMed
Google Scholar
Fisher O, Siman-Tov R, Ankri S (2004) Characterization of cytosine methylated regions and 5-cytosine DNA methyltransferase (Ehmeth) in the protozoan parasite Entamoeba histolytica. Nucleic Acids Res 32:287–297
Article
CAS
PubMed
Google Scholar
Fisher O, Siman-Tov R, Ankri S (2006) Pleiotropic phenotype in Entamoeba histolytica overexpressing DNA methyltransferase (Ehmeth). Mol Biochem Parasitol 147:48–54
Article
CAS
PubMed
Google Scholar
Goll MG, Bestor TH (2005) Eukaryotic cytosine methyltransferases. Annu Rev Biochem 74:481–514
Article
CAS
PubMed
Google Scholar
Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH (2006) Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2. Science 311:395–398
Article
CAS
PubMed
Google Scholar
Gutierrez A, Sommer RJ (2004) Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae. Nucleic Acids Res 32:6388–6396
Article
CAS
PubMed
Google Scholar
Helm M (2006) Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res 34:721–733
Article
CAS
PubMed
Google Scholar
Hengesbach M, Meusburger M, Lyko F, Helm M (2008) Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA 14:180–187
Article
CAS
PubMed
Google Scholar
Hermann A, Schmitt S, Jeltsch A (2003) The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity. J Biol Chem 278:31717–31721
Article
CAS
PubMed
Google Scholar
Hopper AK, Phizicky EM (2003) tRNA transfers to the limelight. Genes Dev 17:162–180
Article
CAS
PubMed
Google Scholar
Howell CY, Bestor TH, Ding F, Latham KE, Mertineit C, Trasler JM, Chaillet JR (2001) Genomic imprinting disrupted by a maternal effect mutation in the Dnmt1 gene. Cell 104:829–838
Article
CAS
PubMed
Google Scholar
Inano K, Suetake I, Ueda T, Miyake Y, Nakamura M, Okada M, Tajima S (2000) Maintenance-type DNA methyltransferase is highly expressed in post-mitotic neurons and localized in the cytoplasmic compartment. J Biochem 128:315–321
CAS
PubMed
Google Scholar
Jeltsch A, Nellen W, Lyko F (2006) Two substrates are better than one: dual specificities for Dnmt2 methyltransferases. Trends Biochem Sci 31:306–308
Article
CAS
PubMed
Google Scholar
Jurkowski TP, Meusburger M, Phalke S, Helm M, Nellen W, Reuter G, Jeltsch A (2008) Human DNMT2 methylates tRNAAsp molecules using a DNA methyltransferase-like catalytic mechanism. RNA 14:1663–1670
Article
CAS
PubMed
Google Scholar
Katoh M, Curk T, Xu Q, Zupan B, Kuspa A, Shaulsky G (2006) Developmentally regulated DNA methylation in Dictyostelium discoideum. Eukaryot Cell 5:18–25
Article
CAS
PubMed
Google Scholar
Kuhlmann M, Borisova BE, Kaller M, Larsson P, Stach D, Na J, Eichinger L, Lyko F, Ambros V, Soderbom F, Hammann C, Nellen W (2005) Silencing of retrotransposons in Dictyostelium by DNA methylation and RNAi. Nucleic Acids Res 33:6405–6417
Article
CAS
PubMed
Google Scholar
Kunert N, Marhold J, Stanke J, Stach D, Lyko F (2003) A Dnmt2-like protein mediates DNA methylation in Drosophila. Development 130:5083–5090
Article
CAS
PubMed
Google Scholar
Lin MJ, Tang LY, Reddy MN, Shen CK (2005) DNA methyltransferase gene dDnmt2 and longevity of Drosophila. J Biol Chem 280:861–864
Article
CAS
PubMed
Google Scholar
Lyko F, Ramsahoye BH, Jaenisch R (2000) DNA methylation in Drosophila melanogaster. Nature 408:538–540
Article
CAS
PubMed
Google Scholar
Mertineit C, Yoder JA, Taketo T, Laird DW, Trasler JM, Bestor TH (1998) Sex-specific exons control DNA methyltransferase in mammalian germ cells. Development 125:889–897
CAS
PubMed
Google Scholar
Okano M, Xie S, Li E (1998) Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases. Nat Genet 19:219–220
Article
CAS
PubMed
Google Scholar
Phalke S, Nickel O, Walluscheck D, Hortig F, Reuter G (2009) Epigenetic control of retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine 5 methyltransferase DNMT2. Nat Genet 41:696–702
Article
CAS
PubMed
Google Scholar
Pinarbasi E, Elliott J, Hornby DP (1996) Activation of a yeast pseudo DNA methyltransferase by deletion of a single amino acid. J Mol Biol 257:804–813
Article
CAS
PubMed
Google Scholar
Rai K, Chidester S, Zavala CV, Manos EJ, James SR, Karpf AR, Jones DA, Cairns BR (2007) Dnmt2 functions in the cytoplasm to promote liver, brain, and retina development in zebrafish. Genes Dev 21:261–266
Article
CAS
PubMed
Google Scholar
Sakaguchi A, Karachentsev D, Seth-Pasricha M, Druzhinina M, Steward R (2008) Functional characterization of the Drosophila Hmt4–20/Suv4–20 histone methyltransferase. Genetics 179:317–322
Article
CAS
PubMed
Google Scholar
Schaefer M, Hagemann S, Hanna K, Lyko F (2009a) Azacytidine inhibits RNA methylation at DNMT2 target sites in human cancer cell lines. Cancer Res:in press
Schaefer M, Pollex T, Hanna K, Lyko F (2009b) RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res 37:e12
Article
PubMed
Google Scholar
Schaefer M, Steringer JP, Lyko F (2008) The Drosophila cytosine-5 methyltransferase Dnmt2 is associated with the nuclear matrix and can access DNA during mitosis. PLoS ONE 3:e1414
Article
PubMed
Google Scholar
Sprinzl M, Vassilenko KS (2005) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 33:D139–140
Article
CAS
PubMed
Google Scholar
Wilkinson CR, Bartlett R, Nurse P, Bird AP (1995) The fission yeast gene pmt1+ encodes a DNA methyltransferase homologue. Nucleic Acids Res 23:203–210
Article
CAS
PubMed
Google Scholar
Yoder JA, Bestor TH (1998) A candidate mammalian DNA methyltransferase related to pmt1p of fission yeast. Hum Mol Genet 7:279–284
Article
CAS
PubMed
Google Scholar