Abstract
The members of the serine–arginine (SR) family of proteins play multiple roles in posttranscriptional gene expression. Initially considered as essential splicing factors confined to the nucleus and regulating constitutive and alternative splicing, SR proteins are now known to shuttle between the nucleus and the cytoplasm and to be involved in mRNA biogenesis, transport, and translation. In Chironomus tentans, hrp45 is an SR protein structurally similar to the Drosophila SRp55/B52 SR protein. We have studied how hrp45, hrp36 [a heterogenous nuclear ribonucleoprotein (hnRNP) protein], and small nuclear RNP (snRNP) proteins are distributed in the transcriptionally active loci of polytene chromosomes in C. tentans. Immunofluorescence visualization of the proteins in double-labeling experiments revealed that hrp45 preferentially associates with a small number of puffs. On the other hand, hrp36 and snRNP proteins were found distributed in a large number of loci with little quantitative difference. Remarkably, hrp45-labeled loci coincide with the sites of transcription of premessenger RNPs of secretory protein (sp) genes. Because the labeling was found sensitive to RNase A treatment, we conclude that the SR protein hrp45 preferentially binds to sp gene transcripts in salivary gland cells. The preferential association of a specific SR protein with a particular type of gene transcripts reflects substrate-specific function(s) of an SR protein, in vivo. The possible roles that hrp45 might be playing in speedy and efficient processing of sp gene transcripts are discussed.
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References
Alzhanova-Ericsson AT, Sun X, Visa N, Kiseleva E, Wurtz T, Daneholt B (1996) A protein of the SR family of splicing factors binds extensively to exonic Balbiani ring pre-mRNA and accompanies the RNA from the gene to the nuclear pore. Genes Dev 10:2881–2893
Baurén G, Jiang W, Bernholm K, Gu F, Wieslander L (1996) Demonstration of a dynamic transcription dependent organization of splicing factors in polytene nuclei. J Cell Biol 133:929–941
Björk P, Wetterberg-Strandh I, Baurén G, Wieslander L (2006) Chironomus tentans-repressor splicing factor represses SR protein function locally on pre-mRNA exons and is displaced at correct splice sites. Mol Biol Cell 17:32–42
Bourgeois CF, Lejeune F, Stevenin J (2004) Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA. Prog Nucleic Acid Res Mol Biol 78:37–88
Cáceres JF, Screaton GR, Krainer AR (1998) A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm. Genes Dev 12:55–66
Case ST, Wieslander L (1992) Secretory proteins of Chironomus salivary glands: structural motifs and assembly characteristics of a novel biopolymer. In: Case ST (ed) Results and problems in cell differentiation, vol 19. Springer, Berlin Heidelberg New York, pp 187–226
Champlin DT, Frasch M, Saumweber H, Lis JT (1991) Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev 5:1611–1621
Daneholt B (2001) Assembly and transport of a premessenger RNP particle. Proc Natl Acad Sci USA 98:7012–7017
Dreyfuss G, Matunis MJ, Pinol Roma S, Burd CG (1993) hnRNP proteins and the biogenesis of mRNA. Annu Rev Biochem 62:289–321
Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol 3:195–205
Fakan S (1994) Perichromatin fibrils are in situ forms of nascent transcript. Trends Cell Biol 4:86–90
Habets WJ, Hoet MH, de Jong BAW, van der Kemp A, van Venrooij WJ (1989) Mapping of B cell epitope on small nuclear ribonucleoproteins that react with human autoantibodies as well as with experimentally induced mouse monoclonal antibodies. J Immunol 143:2560–2566
Huang Y, Steitz JA (2001) Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol Cell 7:899–905
Huang Y, Gattoni R, Stévenin J, Steitz JA (2003) SR splicing factors serve as adapter proteins for TAP-dependent mRNA export. Mol Cell 11:837–843
Kim YJ, Zou JL, Manley JL, Baker BS (1992) The Drosophila RNA-binding protein RBP1 is localized to transcriptionally active sites of chromosomes and a functional similarity to human splicing factor ASF/SF2. Genes Dev 6:2569–2579
Kiseleva E, Wurtz T, Visa N, Daneholt B (1994) Assembly and disassembly of spliceosomes along a specific pre-messenger RNP fiber. EMBO J 13:6052–6061
Krecic AM, Swanson MS (1999) hnRNP complexes: composition, structure, and function. Curr Opin Cell Biol 11:363–371
Laemmli VK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680–685
Lamond AI, Spector DL (2003) Nuclear speckles: a model for nuclear organelles. Nature Rev Mol Cell Biol 4:605–612
Lemaire R, Prasad J, Kashima T, Gustafson J, Manley JL, Lafyatis R (2002) Stability of a PKCI-1-related mRNA is controlled by the splicing factor ASF/SF2: a novel function for SR proteins. Genes Dev 16:594–607
Lerner EA, Lerner MR, Janeway CA, Steitz JA (1981) Monoclonal antibodies to nucleic acid-containing cellular constituents: probes for molecular biology and autoimmune disease. Proc Natl Acad Sci USA 78:2737–2741
Lezzi M, Meyer B, Mähr R (1981) Heat shock phenomena in Chironomus tentans I. In vivo effects of heat, overheat, and quenching on salivary chromosome puffing. Chromosoma 83:327–339
Li X, Manley JL (2005) Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability. Cell 122:365–378
Li X, Wang J, Manley JL (2005) Loss of splicing factor ASF/SF2 induces G2 cell cycle arrest and apoptosis, but inhibits internucleosomal DNA fragmentation. Genes Dev 19:2705–2714
Lin S, Xiao R, Sun P, Xu X, Fu XD (2005) Dephosphorylation-dependent sorting of SR splicing factors during mRNP maturation. Mol Cell 20:413–425
Masuyama K, Taniguchi I, Kataoka N, Ohno M (2004) SR proteins preferentially associate with mRNAs in the nucleus and facilitate their export to the cytoplasm. Genes Cells 9:959–965
Matunis EL, Matunis MJ, Dreyfuss G (1993) Association of individual hnRNP proteins and snRNPs with nascent transcripts. J Cell Biol 121:219–228
Paulsson G, Lendahl U, Galli J, Ericsson C, Wieslander L (1990) The Balbiani ring 3 gene in Chironomus tentans has a diverged repetitive structure split by many introns. J Mol Biol 211:331–349
Reed R, Magni K (2001) A new view of mRNA export separating: separating the wheat from the chaff. Nat Cell Biol 3:E201–204
Ring HZ, Lis JT (1994) The SR protein B52/SRp55 is essential for Drosophila development. Mol Cell Biol 14:7499–7506
Roth MB, Murphy C, Gall JG (1990) A monoclonal antibody that recognizes a phosphorylated epitope stains lampbrush chromosome loops and small granules in the amphibian germinal vesicle. J Cell Biol 111:2217–2223
Roth MB, Zahler AM, Stolk JA (1991) A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J Cell Biol 115:587–596
Sanford JR, Longman D, Cáceres JF (2003) Multiple roles of the SR protein family in splicing regulation. Prog Mol Subcell Biol 31:33–58
Sanford JR, Gray NK, Beckmann K, Cáceres JF (2004) A novel role for shuttling SR proteins in mRNA translation. Genes Dev 18:755–768
Sanford JR, Ellis J, Cáceres JF (2005) Multiple roles of arginine/serine splicing factors in RNA processing. Biochem Soc Trans 33:443–446
Schuttle B, Reynders MMJ, van Assche CLMVJ, Hupperets PSGJ, Bosman FT, Blijham GH (1987) An improved method for the immunocytochemical detection of bromodeoxyuridine labeled nuclei using flow cytometry. Cytometry 8:372–376
Singh OP, Björkroth B, Masich S, Wieslander L, Daneholt B (1999) The intranuclear movement of Balbiani ring premessenger ribonucleoprotein particles. Exp Cell Res 251:135–146
Sun X, Alzhanova-Ericsson AT, Visa N, Aissouni Y, Zhao J, Daneholt B (1998) The hrp23 protein in the Balbiani ring pre-mRNA particles is released just before or at the binding the particles to the nuclear pore complex. J Cell Biol 142:1181–1193
Visa N, Alzhanova-Ericsson AT, Sun X, Kiseleva E, Björkroth B, Wurtz T, Daneholt B (1996) A pre-mRNA-binding protein accompanies the RNA from the gene through the nuclear pores and into polysomes. Cell 84:253–264
Wang J, Takagaki Y, Manley JL (1996) Targeted disruption of an essential vertebrate gene. ASF/SF2 is required for cell viability. Genes Dev 10:2588–2599
Wetterberg I, Zhao J, Masich S, Wieslander L, Skoglund U (2001) In situ transcription and splicing in Balbiani ring 3 gene. EMBO J 20:2564–2574
Wieslander L (1994) The Balbiani ring multigene family: coding repetitive sequences and evolution of a tissue specific cell function. Prog Nucleic Acid Res Mol Biol 48:275–313
Will CL, Lührmann R (2001) Spliceosomal UsnRNP biogenesis, structure and function. Curr Opin Cell Biol 13:290–301
Wurtz T, Kiseleva E, Nacheva G, Alzhanova-Ericsson AT, Rosén A, Daneholt B (1996) Identification of two RNA-binding proteins in Balbiani ring premessenger ribonucleoprotein granules and presence of these proteins in specific subsets of heterogeneous nuclear ribonucleoprotein particles. Mol Cell Biol 16:1425–1435
Wyss C (1982) Ecdysterone, insulin and fly extract needed for the proliferation of normal Drosophila cells in defined medium. Exp Cell Res 139:297–307
Zahler AM, Neugebauer KM, Lane WS, Roth MB (1993) Distinct functions of SR proteins in alternative pre-mRNA splicing. Science 230:219–222
Zhang Z, Krainer AR (2004) Involvement of SR proteins in mRNA surveillance. Mol Cell 19:597–607
Acknowledgements
We thank J. A. Steitz for generously providing the antibody Y12; Lise-Marie Fjelkestam and Birgitta Björkroth for technical assistance; and Sergej Masich for helping with the computer. This study was supported by the Swedish Research Council. OPS was a recipient of a fellowship from the Wenner–Gren Foundations.
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Communicated by E.A. Nigg
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Singh, O.P., Visa, N., Wieslander, L. et al. A specific SR protein binds preferentially to the secretory protein gene transcripts in salivary glands of Chironomus tentans . Chromosoma 115, 449–458 (2006). https://doi.org/10.1007/s00412-006-0073-5
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DOI: https://doi.org/10.1007/s00412-006-0073-5