Skip to main content

Advertisement

Log in

Intestinal microbiota in neonates requiring urgent surgery: assessing the role of probiotics using fecal DNA sequencing

  • Original Article
  • Published:
Pediatric Surgery International Aims and scope Submit manuscript

Abstract

Purpose

To assess the impact of urgent surgery on neonates and the value of an orally administered probiotic preparation of Bifidobacterium animalis subsp. lactis LKM512 (LKM) using fecal DNA sequencing to analyze intestinal microbiota.

Methods

Subjects for this study were 13 neonates born at our institution. Surgical cases required surgery within 3 days of birth. Groups studied were surgical cases administered LKM (n = 4; LKM+), surgical cases not administered have surgery and were not administered LKM (n = 2; CS), and normal healthy neonates (n = 3; CN). Stool specimens (20 mg) were collected five times (after birth, and on days 3, 7, 10, and 14 after surgery in surgical cases, and after birth, and on days 4, 8, 11, and 15 of life in controls).

Results

Clinical data were similar for LKM+ and LKM−. Enterobacteriaceae, Streptococcaceae, Staphylococcaceae and Bifidobacteriaceae were identified in the descending order of abundance in CS stool. Streptococcaceae, Staphylococcaceae, Enterococcaceae and Bifidobacteriaceae were identified in the descending order of abundance in LKM+ stool. Bifidobacteriaceae, Enterobacteriaceae, Staphylococcaceae and Streptococcaceae were identified in the descending order of abundance in LKM− stool. Unexpectedly, Bifidobacteriaceae was significantly more abundant in LKM− than LKM+ (p < 0.05).

Conclusion

Surgical stress appears to affect intestinal microbiota considerably. Probiotic administration in neonates requires clarification.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  1. Martin R, Nauta AJ, Ben Amor K, Knippels LM, Knol J, Garssen J (2010) Early life: gut microbiota and immune development in infancy. Benef Microbes 1(4):367–382

    Article  PubMed  CAS  Google Scholar 

  2. Johnson CL, Versalovic J (2012) The human microbiome and its potential importance to pediatrics. Pediatrics 129(5):950–960

    Article  PubMed  PubMed Central  Google Scholar 

  3. Drell T, Lutsar I, Stsepetova J, Parm U, Metsvaht T, Ilmoja ML, Simm J, Sepp E (2014) The development of gut microbiota in critically ill extremely low birth weight infants assessed with 16S rRNA gene based sequencing. Gut Microbes 5(3):304–312

    Article  PubMed  PubMed Central  Google Scholar 

  4. Magne F, Abely M, Boyer F, Morville P, Pochart P, Suau A (2006) Low species diversity and high interindividual variability in faeces of preterm infants as revealed by sequences of 16S rRNA genes and PCR-temporal temperature gradient gel electrophoresis profiles. FEMS Microbiol Ecol 57(1):128–138

    Article  PubMed  CAS  Google Scholar 

  5. Mitsuoka T, Kaneuchi C (1977) Ecology of the bifidobacteria. Am J Clin Nutr 30(11):1799–1810

    PubMed  CAS  Google Scholar 

  6. Bergmann KR, Liu SX, Tian R, Kushnir A, Turner JR, Li HL, Chou PM, Weber CR, De Plaen IG (2013) Bifidobacteria stabilize claudins at tight junctions and prevent intestinal barrier dysfunction in mouse necrotizing enterocolitis. Am J Pathol 182(5):1595–1606

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  7. Kanamori Y, Iwanaka T, Sugiyama M, Komura M, Takahashi T, Yuki N, Morotomi M, Tanaka R (2010) Early use of probiotics is important therapy in infants with severe congenital anomaly. Pediatr Int 52(3):362–367

    Article  PubMed  Google Scholar 

  8. Matsumoto M, Ishige A, Yazawa Y, Kondo M, Muramatsu K, Watanabe K (2012) Promotion of intestinal peristalsis by Bifidobacterium spp. capable of hydrolysing sennosides in mice. PLoS One 7(2):e31700

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  9. Arboleya S, Sanchez B, Milani C, Duranti S, Solis G, de los Reyes-Gavilan CG, Fernandez N, Ventura M, Margolles A, Gueimonde M (2015) Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics. J Pediatr 166(3):538–544

    Article  PubMed  CAS  Google Scholar 

  10. Matsumoto M, Aranami A, Ishige A, Watanabe K, Benno Y (2007) LKM512 yogurt consumption improves the intestinal environment and induces the T-helper type 1 cytokine in adult patients with intractable atopic dermatitis. Clin Exp Allergy: J Br Soc Allergy Clin Immunol 37(3):358–370

    Article  CAS  Google Scholar 

  11. Matsumoto M, Ohishi H, Benno Y (2001) Impact of LKM512 yogurt on improvement of intestinal environment of the elderly. FEMS Immunol Med Microbiol 31(3):181–186

    Article  PubMed  CAS  Google Scholar 

  12. Ichikawa S, Ishihara M, Okazaki T, Warabi K, Kato Y, Hori S, Lane GJ, Hiramatsu K, Inada E, Kobayashi H, Yamataka A (2007) Prospective study of antibiotic protocols for managing surgical site infections in children. J Pediatr Surg 42(6):1002–1007 (discussion 1007)

    Article  PubMed  Google Scholar 

  13. Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R (1993) Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res 21(13):3025–3049

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  14. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  15. Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19):2460–2461

    Article  PubMed  CAS  Google Scholar 

  16. Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R (2010) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26(2):266–267

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  17. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73(16):5261–5267

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  18. Lau CS, Chamberlain RS (2015) Probiotic administration can prevent necrotizing enterocolitis in preterm infants: a meta-analysis. J Pediatr Surg. doi:10.1016/j.jpedsurg.2015.05.008

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Manabu Okawada.

Additional information

H. Murakami and Y. Shimomura contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Murakami, H., Shimomura, Y., Matsumoto, M. et al. Intestinal microbiota in neonates requiring urgent surgery: assessing the role of probiotics using fecal DNA sequencing. Pediatr Surg Int 32, 37–43 (2016). https://doi.org/10.1007/s00383-015-3810-0

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00383-015-3810-0

Keywords

Navigation