Skip to main content
Log in

Potential of RAPD analysis of the promiscuous nodulation trait in soybean (Glycine max L)

  • Short Communication
  • Published:
Biology and Fertility of Soils Aims and scope Submit manuscript

Abstract

Inoculation of soybean with cowpea-type rhizobia results in either a promiscuous type of nodulation which produces a plant with functional nodules capable of N fixation and has green leaves without N fertilization or nonpromiscuous type of nodulation which forms nonfunctional (or no nodules) and develops yellow leaves without N fertilization. Promiscuous soybean types are desirable in production regions where the availability of commercial inoculants is limited. Plant breeding efforts to develop improved promiscuous cultivars particularly in developing countries require inexpensive molecular tools for laboratory-based germplasm selection in order to reduce lengthy conventional breeding cycles. The objective of this study was to evaluate the potential of random amplified polymorphic DNA (RAPD) method in identifying promiscuous soybean genotypes. Segregating plant populations created by reciprocal crosses of promiscuous × nonpromiscuous soybean lines were evaluated for useful RAPD markers for promiscuous nodulation. One hundred and sixty random decamers of arbitrary sequences were used in screening for polymorphic loci between the two parental lines. A RAPD pattern which is consistent with the soybean genotypes segregating for promiscuous nodulation was generated by one decamer, OPB06 (5′-TGCTCTGCCC-3′), indicating the potential of using RAPD markers in selecting for promiscuity in soybean breeding programs.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

References

  • Abaidoo R, Keyser H, Singleton PW, Borthakur D, Dashiell K (1999) Distribution and characteristics of Bradyrhizobium spp. nodulating African soybeans. In: Martinez E, Hernandez G (eds) Highlights of nitrogen fixation research. Plenum, New York, pp 77–84

    Chapter  Google Scholar 

  • Abaidoo R, Keyser H, Singleton PW, Borthakur D (2000) Bradyrhizobium spp. (TGx) isolates nodulating the new soybean cultivars in Africa are diverse and distinct from bradyrhizobia that nodulate North American soybeans. Int J Syst Evol Microbiol 50:225–234

    Article  PubMed  CAS  Google Scholar 

  • Chowdhury MA, Anndrahennadi CP, Slinkard AE, Vandenberg A (2001) RAPD and SCAR markers for resistance to ascochyta blight in lentil. Euphytica 118:331–337

    Article  CAS  Google Scholar 

  • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • Ferreira AR, Keim P (1997) Genetic mapping of soybean [Glycine max (L.) Merr.] using random amplified polymorphic DNA (RAPD). Plant Mol Biol Report 15:335–354

    Article  CAS  Google Scholar 

  • Garcia GM, Stalker HT, Shroeder E, Kochert G (1996) Identification of RAPD, SCAR, and RFLP markers tightly linked to nematode resistance genes introgressed from Arachis cardenasii into Arachis hypogea. Genome 39:836–845

    Article  PubMed  CAS  Google Scholar 

  • Ghislain M, Andrade D, Rodríguez F, Hijmans RJ, Spooner DM (2006) Genetic analysis of the cultivated potato Solanum tuberosum L. Phureja group using RAPDs and nuclear SSRs. Theor Appl Genet 113:1515–1527

    Article  PubMed  CAS  Google Scholar 

  • Gwata ET, Nziramasanga N (2001) Seed protein and oil content in Zimbabwean soyabean (Glycine max L.) varieties. Plant Var Seeds 14:125–128

    Google Scholar 

  • Gwata ET, Wofford DS, Boote KJ, Mushoriwa M (2004) Determination of effective nodulation in early juvenile soybean plants for genetic and biotechnology studies. Afr J Biotechnol 11:417–420

    Google Scholar 

  • Gwata ET, Wofford DS, Boote KJ, Blount AR, Pfahler PL (2005) Inheritance of promiscuous nodulation in soybean. Crop Sci 45:635–638

    Article  Google Scholar 

  • Hernandez P, Martin A, Dorado G (1999) Development of SCARs by direct sequencing of RAPD products: a practical tool for the introgression and marker-assisted selection of wheat. Mol Breed 5:245–253

    Article  CAS  Google Scholar 

  • Kueneman EA, Root WR, Dashiell KE, Hohenberg J (1984) Breeding soybeans for the tropics capable of nodulating effectively with indigenous Rhizobium spp. Plant Soil 82:387–396

    Article  Google Scholar 

  • Lawson WR, Goulter KC, Henry RJ, Kong GA, Kochman JK (1998) Marker-assisted selection for two rust resistance genes in sunflower. Mol Breed 4:227–237

    Article  CAS  Google Scholar 

  • Li Z, Nelson RL (2001) Genetic diversity among soybean accessions from three countries measured by RAPDs. Crop Sci 41:1337–1347

    Article  CAS  Google Scholar 

  • Martin GB, Williams JGK, Tanksley SD (1991) Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. PNAS 88:2336–2340

    Article  PubMed  CAS  Google Scholar 

  • Newbury HJ, Ford-Lloyd BV (1993) The use of RAPD for assessing variation in plants. Plant Growth Regul 12:43–51

    Article  CAS  Google Scholar 

  • Ogunbayo SA, Ojo DK, Guei RG, Oyelakin OO, Sanni KA (2005) Phylogenetic diversity and relationships among 40 rice accessions using morphological and RAPDs techniques. Afr J Biotechnol 4:1234–1244

    CAS  Google Scholar 

  • Ojo DK, Ajayi AO, Oduwaye OA (2012) Genetic relationships among soybean accessions based on morphological and RAPDs techniques. Pert J Trop Agric Sci 35:237–248

    Google Scholar 

  • Ramalema SP, Shimelis H, Ncube I, Kunert KK, Mashela PW (2010) Genetic analysis among selected Vernonia lines through seed oil content, fatty acids and RAPD DNA markers. Afr J Biotechnol 9:117–122

    CAS  Google Scholar 

  • Vincent JM (1970) A manual for the practical study of root nodule bacteria. IBP handbook no. 15. Blackwell, Oxford

    Google Scholar 

  • Williams JGK, Kubelik AR, Livak KJ, Rafalsky A, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535

    Article  PubMed  CAS  Google Scholar 

  • Zheng C, Chang R, Qiu L, Chen P, Wu X, Chen S (2003) Identification and characterization of a RAPD/SCAR marker linked to a resistance gene for soybean mosaic virus in soybean. Euphytica 132:199–210

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Eastonce T. Gwata.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Gwata, E.T., Wofford, D.S. Potential of RAPD analysis of the promiscuous nodulation trait in soybean (Glycine max L). Biol Fertil Soils 49, 241–244 (2013). https://doi.org/10.1007/s00374-012-0743-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00374-012-0743-9

Keywords

Navigation