Skip to main content

Advertisement

Log in

Soil organic C variability and microbial functions in a Mediterranean agro-forest ecosystem

  • Original Paper
  • Published:
Biology and Fertility of Soils Aims and scope Submit manuscript

Abstract

Five soils characterised by different agro-forest managements, typical of Mediterranean environment and with increasing human impact were chosen in Sardinia (Italy): two vineyards with different management systems, a rotation hay crop-pasture and a forest (Quercus suber L.). The study aimed to investigate the relationships between C storage and microbial functionality in soil under different managements. Pools of total organic C and microbial biomass C were determined, as well as the loss of organic C due to microbial respiration (basal and cumulative) and several microbial indices (metabolic, mineralization, and microbial quotient) as indicators of the microbial efficiency in the use of energy and the degree of substrate limitation for soil microbes. Enzymes were chosen on their relevance in the C (β-cellobiohydrolase, N-acetyl-β-glucosaminidase, β-glucosidase, α-glucosidase), N (leucine aminopeptidase), S (arylsulphatase) and P (acid phosphatase) cycling and were used as indicators of functional diversity in soil. Organic C pools and enzyme activities on average increased noticeably in soils with a lower human impact showing the highest values in forest and the lowest in the vineyards, following the trend of organic matter availability. The trend in functional diversity reflected the increase of microbial pool and organic C availability: the vineyards showed a lower Shannon’s diversity index, whilst pasture and forest sites reached the maximum levels of functional diversity. These soils showed an increase of microbial efficiency in the use of available resources and the decrease of substrate limitation for soil microbes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Anderson TH (2003) Microbial eco-physiological indicators to assess soil quality. Agr Ecosyst Environ 98:285–293

    Article  Google Scholar 

  • Anderson TH, Domsch KH (1989) Ratios of microbial biomass carbon to total organic-C in arable soils. Soil Biol Biochem 21:471–479

    Article  Google Scholar 

  • Aru A, Baldaccini P, Delogu G, Dessena MA, Madrau S, Melis R (1990) Carta dei Suoli della Sardegna, scala 1/250.000. Assessorato alla programmazione e all’assestamento del territorio, Centro Regionale Programmazione, Dip. Sc. della Terra, Univ. di Cagliari, Italy

  • Badalucco L, Grego S, Dell’Orco S, Nannipieri P (1992) Effect of liming on some chemical, biochemical and micro-biological properties of acid soil under spruce (Picea abies L.). Biol Fert Soils 14:76–83

    Article  CAS  Google Scholar 

  • Bandick AK, Dick RP (1999) Field management effects on soil enzyme activities. Soil Biol Biochem 31:1471–1479

    Article  CAS  Google Scholar 

  • Bending GD, Turner MK, Jones JE (2002) Interactions between crop residue and soil organic matter quality and the functional diversity of soil microbial communities. Soil Biol Biochem 34:1073–1082

    Article  CAS  Google Scholar 

  • Bending GD, Turner MK, Rayns F, Marx MC, Wood M (2004) Microbial and biochemical soil quality indicators and their potential for differentiating areas under contrasting agricultural management regimes. Soil Biol Biochem 36:1785–1792

    Article  CAS  Google Scholar 

  • Caldwell BA (2005) Enzyme activities as a component of soil biodiversity: a review. Pedobiologia 49:637–644

    Article  CAS  Google Scholar 

  • Cerri CEP, Coleman DS, Jenkinson M, Victoria R, Cerri CC (2003) Modeling soil carbon from forest and pasture ecosystems of Amazon, Brazil. Soil Sci Soc Am J 67:1879–1887

    Article  CAS  Google Scholar 

  • Conant RT, Paustian K, Elliott ET (2001) Grassland management and conversion into grassland: effects on soil carbon. Ecol Applic 11:343–355

    Article  Google Scholar 

  • Degens BP, Schipper LA, Sparling GP, Vojvodic-Vukovic M (2000) Decreases in organic C reserves in soils can reduce the catabolic diversity of soil microbial communities. Soil Biol Biochem 32:189–196

    Article  CAS  Google Scholar 

  • Dilly O, Munch JC (1998) Ratios between estimates of microbial biomass content and microbial activity in soils. Biol Fert Soils 27:374–379

    Article  CAS  Google Scholar 

  • Dixon RK, Brown S, Houghton RA, Solomon AM, Trexler MC, Wisniewski J (1994) Carbon pools and flux of global forest ecosystem. Science 263:185–190

    Article  PubMed  CAS  Google Scholar 

  • Ekenler M, Tabatabai MA (2002) β-glucosaminidase activity of soils: effect of cropping systems and its relationship to nitrogen mineralization. Biol Fert Soils 36:367–376

    Article  CAS  Google Scholar 

  • Fisher MJ, Rao IM, Ayarza MA, Lascano CE, Sanz JI, Thomas RJ, Vera RR (1994) Carbon storage by introduced rooted grasses in the South American savannas. Nature 371:236–238

    Article  Google Scholar 

  • Franke R, Briesen I, Wojciechowski T, Faust A, Yephremov A, Nawrath C, Schreiber L (2005) Apoplastic polyesters in Arabidopsis surface tissues—a typical suberin and a particular cutin. Phytochemistry 66:2643–2658

    Article  PubMed  CAS  Google Scholar 

  • Geisseler D, Horwath WR (2009) Relationship between carbon and nitrogen availability and extracellular enzyme activities in soil. Pedobiologia 53:87–98

    Article  CAS  Google Scholar 

  • Guo LB, Gifford RM (2002) Soil carbon stocks and land use change: a meta analysis. Glob Change Biol 8:345–360

    Article  Google Scholar 

  • Kandeler E, Eder G (1993) Effect of cattle slurry in grassland on microbial biomass and on activities of various enzymes. Biol Fertil Soils 16:249–254

    Article  CAS  Google Scholar 

  • Kandeler E, Stemmer M, Klimanek EM (1996) Influence of heavy metals on the functional diversity of soil microbial communities. Biol Fert Soils 23:299–306

    Article  CAS  Google Scholar 

  • Landi L, Renella G, Moreno JL, Falchini L, Nannipieri P (2000) Influence of cadmiuum on the metabolic quotient, l-:d-glutamic acid respiration ratio and enzyme activity:microbial biomass ratio under laboratory conditions. Biol Fert Soils 32:8–16

    Article  CAS  Google Scholar 

  • Lal R (2005) World crop residues production and implications of its use as a biofuel. Environ Int 31:575–584

    Article  PubMed  CAS  Google Scholar 

  • Lal R, Kimble JM (1997) Conservation tillage for carbon sequestration. Nutr Cycl Agroecosys 49:243–253

    Article  CAS  Google Scholar 

  • Li Z, Wu X, Chen B (2007) Changes in transformation of soil organic C and functional diversity of soil microbial community under different land uses. Agric Sci China 6(10):1235–1245

    CAS  Google Scholar 

  • Lorenz K, Lal R, Preston CM, Nierop KGJ (2007) Strengthening the soil organic carbon pool by increasing contributions from recalcitrant aliphatic bio(macro)molecules. Geoderma 142:1–10

    Article  CAS  Google Scholar 

  • Magurran AE (2004) Measuring biological diversity. Blackwell, USA, p 256

    Google Scholar 

  • Marx MC, Wood M, Jarvis SC (2001) A microplate fluorimetric assay fir the study of enzyme diversity in soils. Soil Biol Biochem 33:1633–1640

    Article  CAS  Google Scholar 

  • Miller M, Palojarvi A, Rangger A, Reeslev M, Kjioller A (1998) The use of fluorogenic substrates to measure fungal presence and activity in soil. Appl Environ Microbiol 64:613–617

    PubMed  CAS  Google Scholar 

  • Murty D, Kirschbaum MUF, Mcmurtrie RE, Mcgilvray H (2002) Does conversion of forest to agricultural land change soil carbon and nitrogen? a review of the literature. Glob Change Biol 8:105–123

    Article  Google Scholar 

  • Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003) Microbial diversity and soil functions. Eur J Soil Sc 54:655–670

    Article  Google Scholar 

  • Nannipieri P, Kandeler E, Ruggiero P (2002) Enzyme activities and microbiological and biochemical processes in soil. In: Burns RG, Dick RP (eds) Enzymes in the environment: activity ecology and applications. Marcel Dekker, New York, pp 1–33

    Google Scholar 

  • Nsabimana D, Haynes RJ, Wallis FM (2004) Size, activity and catabolic diversity of the soil microbial biomass as affected by land use. Appl Soil Ecol 26:81–92

    Article  Google Scholar 

  • Odum EP (1969) The strategy of ecosystem development. Science 164:262–270

    Article  PubMed  CAS  Google Scholar 

  • Pinzari F, Trinchera A, Benedetti A, Sequi P (1999) Use of biochemical indices in the Mediterranean environment: comparison among soils under different forest vegetation. J Microbiol Meth 36:21–28

    Article  CAS  Google Scholar 

  • Post WM, Know KC (2000) Soil carbon sequestration and land-use change: processes and potential. Glob Change Biol 6:317–327

    Article  Google Scholar 

  • Post WM, Peng T-H, Emanuel WR, King AW, Dale VH, De Angelis DL (1990) The global carbon cycle. Am Sci 78:310–326

    Google Scholar 

  • Rodríguez-Loinaz G, Onaindia M, Amezaga I, Mijangos I, Garbisu C (2008) Relationship between vegetation diversity and soil functional diversity in native mixed-oak forests. Soil Biol Biochem 40:49–60

    Article  Google Scholar 

  • Ross DJ, Tate KR, Feltham CW (1996) Microbial biomass, and C and N mineralization, in litter and mineral soil of adjacent montane ecosystems in a southern beech (Nothofagus) forest and a tussock grassland. Soil Biol Biochem 28:1613–1620

    Article  CAS  Google Scholar 

  • Sall SN, Masse D, Ndour NYB, Chotte JL (2006) Does cropping modify the decomposition function and the diversity of the soil microbial community of tropical fallow soil? Appl Soil Ecol 31:211–219

    Article  Google Scholar 

  • Sinsabaugh RL, Antibus RK, Linkins AE, McClaugherty CA, Rayburn L, Repert D, Weiland T (1992) Wood decomposition over a first order watershed: mass loss as a function of exoenzyme activity. Soil Biol Biochem 24:743–749

    Article  CAS  Google Scholar 

  • Springer U, Klee J (1954) Prüfung der leistungsfähigkeit von einigen wichtigeren verfahren zur bestimmung des kohlenstoffs mittels chromschwefelsäure sowie vorschlag einer neuen schnellmethode. Z Pflanzenernährung Bodenk 64:1

    Article  CAS  Google Scholar 

  • Tan Z, Lal R (2005) Carbon sequestration potential estimates with changes in land use and tillage practice in Ohio, USA. Agr Ecosyst Environ 111:140–152

    Article  CAS  Google Scholar 

  • Trasar-Cepeda C, Leirós MC, Gil-Sotres F (2008) Hydrolytic enzyme activities in agricultural and forest soils some implications for thier use as indicators of soil quality. Soil Biol Biochem 40:2146–2155

    Article  CAS  Google Scholar 

  • Vance ED, Brookes PC, Jenkinson DS (1987) An extraction method for measuring soil microbial biomass C. Soil Biol Biochem 19:703–707

    Article  CAS  Google Scholar 

  • Vepsäläinen M, Kukkonen S, Vestberg M, Sirviö H, Niemi RM (2001) Application of soil enzyme activity test kit in a field experiment. Soil Biol Biochem 33:1665–1672

    Article  Google Scholar 

  • Waldrop MP, Balser TC, Firestone MK (2000) Linking microbial community composition to function in a tropical soil. Soil Biol Biochem 32:1837–1846

    Article  CAS  Google Scholar 

  • Wardle DA, Ghani A (1995) Why is the strength of relationships between pairs of methods for estimating soil microbial biomass often so variable? Soil Biol Biochem 27:821–828

    Article  CAS  Google Scholar 

  • Woomer PL, Martin A, Albrecht A, Resk DVS, Scharpenseal HW (1994) The importance and management of soil organic matter in the tropics. In: Woomer PL, Swift MJ (eds) The biological management of tropical soil fertility. Wiley, Chichester, pp 47–80

    Google Scholar 

  • Worldwide Bioclimatic Classification System, 1996-2009, S.Rivas-Martinez & S.Rivas-Saenz, Phytosociological Research Center, Spain. http://www.globalbioclimatics.org

Download references

Acknowledgments

The research was funded by the Ministry of University in the context of the FISR SOILSINK research project, Line 1 (national coordinator: Rosa Francaviglia, CRA Rome). The experimental site was chosen on the basis of vegetation and soil surveys made in collaboration with Salvatore Madrau, Simonetta Bagella, Rossella Filigheddu, Maria Carmela Caria, and Emmanuele Farris (University of Sassari).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alessandra Lagomarsino.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lagomarsino, A., Benedetti, A., Marinari, S. et al. Soil organic C variability and microbial functions in a Mediterranean agro-forest ecosystem. Biol Fertil Soils 47, 283–291 (2011). https://doi.org/10.1007/s00374-010-0530-4

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00374-010-0530-4

Keywords

Navigation