Skip to main content
Log in

Influence of different litter quality on the abundance of genes involved in nitrification and denitrification after freezing and thawing of an arable soil

  • Short Communication
  • Published:
Biology and Fertility of Soils Aims and scope Submit manuscript

Abstract

Due to disruption of soil aggregates and cell lysis and the subsequent release of organic C and N, increased microbial N transformation processes can be observed after freeze–thaw cycles. In a microcosm study, we investigated the influence of plant residues with different C/N ratios (lucerne-clover-grass-mix and wheat straw) on N transformations and the abundance pattern of the corresponding functional genes in an arable soil after freezing and thawing. Unfrozen soil samples, continuously incubated at 10°C, served as control. Concentration of soil NH +4 , NO 3 , and water-extractable organic C (WEOC) as well as genes involved in nitrification and denitrification, quantified by real-time PCR, were determined before freezing and 1, 3, and 7 days after thawing. The amounts of inorganic N and WEOC as well as the investigated gene abundance pattern did hardly differ between control samples and samples subjected to freezing and thawing that have been amended with straw. In contrast, clear alterations of the measured parameters and abundances were observed after freezing and thawing in samples being amended with the lucerne-clover-grass-mix compared to the control samples.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Reference

  • Braker G, Fesefeldt A, Witzel KP (1998) Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64:3769–3775

    CAS  PubMed  Google Scholar 

  • Clark K, Chantigny MH, Angers DA, Rochette P, Parent LE (2009) Nitrogen transformations in cold and frozen agricultural soils following organic amendments. Soil Biol Biochem 41:348–356

    Article  CAS  Google Scholar 

  • Davidson EA, Kingerlee W (1997) A global inventory of nitric oxide emissions from soils. Nutr Cycl Agroecosyst 48:37–50

    Article  CAS  Google Scholar 

  • Elliott AC, Henry HAL (2009) Freeze–thaw cycle amplitude and freezing rate effects on extractable nitrogen in a temperate old field soil. Biol Fertil Soils 45:469–476

    Article  CAS  Google Scholar 

  • Griffiths RI, Whiteley AS, ƠDonnell AG, Bailey MJ (2000) Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl Environ Microbiol 66:5488–5491

    Article  CAS  PubMed  Google Scholar 

  • Hai B, Diallo NH, Sall S, Haesler F, Schauss K, Bonzi M, Assigbetse K, Chotte JL, Munch JC, Schloter M (2009) Quantification of key genes steering the microbial nitrogen cycle in the rhizosphere of sorghum cultivars in tropical agroecosystems. Appl Environ Microbiol 75:4993–5000

    Article  CAS  PubMed  Google Scholar 

  • Henry S, Baudoin E, López-Gutiérrez JC, Laurent FM, Brauman A, Philippot L (2004) Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR. J Microbiol Methods 59:327–335

    Article  CAS  PubMed  Google Scholar 

  • Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442:806–809

    Article  CAS  PubMed  Google Scholar 

  • Michotey V, Méjean V, Bonin P (2000) Comparison of methods for quantification of cytochrome cd1-denitrifying bacteria in environmental marine samples. Appl Environ Microbiol 66:1564–1571

    Article  CAS  PubMed  Google Scholar 

  • Mrkonjic Fuka M, Engel M, Hagn A, Munch JC, Sommer M, Schloter M (2009) Changes of diversity pattern of proteolytic bacteria over time and space in an agricultural soil. Microb Ecol 57:391–401

    Article  PubMed  Google Scholar 

  • Mueller T, Jensen LS, Nielsen NE, Magid J (1998) Turnover of carbon and nitrogen in a sandy loam soil following incorporation of chopped maize plants, barley straw and blue grass in the field. Soil Biol Biochem 30:561–571

    Article  CAS  Google Scholar 

  • Nannipieri P, Paul E (2009) The chemical and functional characterization of soil N and its biotic components. Soil Biol Biochem 41:2357–2369

    Article  CAS  Google Scholar 

  • Nicolardot B, Bouziri L, Bastian F, Ranjard L (2007) A microcosm experiment to evaluate the influence of location and quality of plant residues on residue decomposition and genetic structure of soil microbial communities. Soil Biol Biochem 39:1631–1644

    Article  CAS  Google Scholar 

  • Phillips RL (2008) Denitrification in cropping systems at sub-zero soil temperatures. A review. Agron Sustain Dev 28:87–93

    Article  CAS  Google Scholar 

  • Rotthauwe JH, Witzel KP, Liesack W (1997) The ammonia monooxygenase structural gene amoA as a functional marker: Molecular finescale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63:4704–4712

    CAS  Google Scholar 

  • Ruser R, Schilling R, Steindl H (1998) Soil compaction and fertilization effects on nitrous oxide and methane fluxes in potato fields. Soil Sci Soc Am J 62:1587–1595

    Article  CAS  Google Scholar 

  • Schauss K, Focks A, Leininger S, Kotzerke A, Heuer H, Thiele-Bruhn S, Sharma S, Wilke BM, Matthies M, Smalla K, Munch JC, Amelung W, Kaupenjohann M, Schloter M, Schleper C (2009) Dynamics and functional relevance of ammonia-oxidizing archaea in two agricultural soils. Environ Microbiol 11:446–456

    Article  CAS  PubMed  Google Scholar 

  • Schleper C, Jurgens G, Jonuscheit M (2005) Genomic studies of uncultivated archaea. Nat Rev Microbiol 3:479–488

    Article  CAS  PubMed  Google Scholar 

  • Sharma S, Aneja MK, Mayer J, Munch JC, Schloter M (2005) Characterization of bacterial community structure in rhizosphere soil of grain legumes. Microb Ecol 49:407–415

    Article  CAS  PubMed  Google Scholar 

  • Sharma S, Szele Z, Schilling R, Munch JC, Shloter M (2006) Influence of freeze–thaw stress on the structure and function of microbial communities and denitrifying populations in soil. Appl Environ Microbiol 72:2148–2154

    Article  CAS  PubMed  Google Scholar 

  • Throbäck IN, Enwall K, Jarvis Å, Hallin S (2004) Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol Ecol 49:401–417

    Article  PubMed  CAS  Google Scholar 

  • Valentine DL (2007) Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat Rev Microbiol 5:316–323

    Article  CAS  PubMed  Google Scholar 

  • Wang WJ, Baldock JA, Dalal RC, Moody PW (2004) Decomposition dynamics of plant materials in relation to nitrogen availability and biochemistry determined by NMR and wet-chemical analysis. Soil Biol Biochem 36:2045–2058

    Article  CAS  Google Scholar 

  • Zsolnay Á (2003) Dissolved organic matter: artefacts, definitions, and functions. Geoderma 113:187–209

    Article  CAS  Google Scholar 

Download references

Acknowledgment

The authors wish to acknowledge financial support from the China Scholarship Council (CSC).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Mingxia Su.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Su, M., Kleineidam, K. & Schloter, M. Influence of different litter quality on the abundance of genes involved in nitrification and denitrification after freezing and thawing of an arable soil. Biol Fertil Soils 46, 537–541 (2010). https://doi.org/10.1007/s00374-010-0449-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00374-010-0449-9

Keywords

Navigation