Adam TC, Burkepile DE, Ruttenberg BI, Paddack MJ (2015) Herbivory and the resilience of Caribbean coral reefs: Knowledge gaps and implications for management. Mar Ecol Prog Ser 520:1–20
Google Scholar
Althaus F, Hill N, Edwards L, Ferrari R (2013) CATAMI Classification scheme for scoring marine biota and substrata in underwater imagery – A pictorial guide to the collaborative and annotation tools for analysis of marine imagery and video (CATAMI) classification scheme. Version 1. Australia
Alwany MA, Thaler E, Stachowitsch M (2009) Parrotfish bioerosion on Egyptian Red Sea reefs. J Exp Mar Bio Ecol 371:170–176
Google Scholar
Anderson MJ, Gorley RN, Clarke KR (2008) PERMANOVA+ for PRIMER: Guide to software and statistical methods. PRIMER-E Ltd, UK
Google Scholar
Aponte N, Ballantine D (2001) Depth distribution of algal species on the deep insular fore reef at Lee Stocking Island, Bahamas. Deep Sea Res 1 Oceanogr Res Pap 48:2185–2194
Asher J, Williams ID, Harvey ES (2017) Mesophotic depth gradients impact reef fish assemblage composition and functional group partitioning in the main Hawaiian Islands. Front Mar Sci 4:1–18
Google Scholar
Bejarano I, Appeldoorn R, Nemeth M (2014) Fishes associated with mesophotic coral ecosystems in La Parguera, Puerto Rico. Coral Reefs 33:313–328
Google Scholar
Bellwood DR, Hughes TP, Hoey AS (2006) Sleeping functional group drives coral-reef recovery. Curr Biol 16:2434–2439
CAS
PubMed
Google Scholar
Bellwood DR, Hoey AS, Hughes TP (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proc Biol Sci 279:1621–1629
PubMed
Google Scholar
Ben Rais Lasram F, Guilhaumon F, Albouy C, Somot S, Thuiller W, Mouillot D (2010) The Mediterranean Sea as a ‘cul-de-sac’ for endemic fishes facing climate change. Glob Chang Biol 16:3233–3245
Google Scholar
Bessey C, Keesing JK, McLaughlin J, Rees M, Tonks M, Kendrick GA, Olsen YS (2019) Teleost community composition and the role of herbivory on the intertidal reef of a small isolated island in north-west Australia. Mar Freshw Res 71:648–696
Google Scholar
Bonaldo RM, Pires MM, Roberto P, Hoey S, Hay ME (2017) Small marine protected areas in Fiji provide refuge for reef fish assemblages, feeding groups, and corals. PLoS ONE 12:e0170638
PubMed
PubMed Central
Google Scholar
Bongaerts P, Frade PR, Hay KB, Englebert N, Latijnhouwers KRW, Bak RPM, Vermeij MJA, Hoegh-Guldberg O (2015) Deep down on a Caribbean reef: lower mesophotic depths harbor a specialized coral-endosymbiont community. Sci Rep 5:7652
CAS
PubMed
PubMed Central
Google Scholar
Brokovich E, Ayalon I, Einbinder S, Segev N, Shaked Y, Genin A, Kark S, Kiflawi M (2010) Grazing pressure on coral reefs decreases across a wide depth gradient in the Gulf of Aqaba, Red Sea. Mar Ecol Prog Ser 399:69–80
Google Scholar
Bruno JF, Isabelle M, Toth L (2019) Climate change, coral loss, and the curious case of the parrotfish paradigm: why don’t marine protected areas improve reef resilience? Ann Rev Mar Sci 11:307–334
PubMed
Google Scholar
Brunsdon C, Fotheringham AS, Charlton ME (1996) Geographically weighted regression: a method for exploring spatial nonstationarity. Geogr Anal 28:281–298
Google Scholar
Burkepile DE, Hay ME (2010) Impact of herbivore identity on algal succession and coral growth on a Caribbean reef. PLoS ONE 5:e8963
PubMed
PubMed Central
Google Scholar
Burnham K, Anderson D (2002) Model selection and multimodel inference: a practical information-theoretic approach. Springer-Verlag, Berlin, New York
Google Scholar
Cappo M, De’ath G, Speare P, (2007) Inter-reef vertebrate communities of the Great Barrier Reef Marine Park determined by baited remote underwater video stations. Mar Ecol Prog Ser 350:209–221
Google Scholar
Carassou L, Léopold M, Guillemot N, Wantiez L, Kulbicki M (2013) Does Herbivorous Fish Protection Really Improve Coral Reef Resilience? A Case Study from New Caledonia (South Pacific). PLoS ONE 8:e60564
CAS
PubMed
PubMed Central
Google Scholar
Carpenter KE, Abrar M, Aeby G, Aronson RB, Banks S, Bruckner A, Chiriboga A, Cortés J, Delbeek JC, Devantier L, Edgar GJ, Edwards AJ, Fenner D, Guzmán HM, Hoeksema BW, Hodgson G, Johan O, Licuanan WY, Livingstone SR, Lovell ER, Ja M, Obura DO, Ochavillo D, Ba P, Precht WF, Quibilan MC, Reboton C, Richards ZT, Rogers AD, Sanciangco J, Sheppard A, Sheppard C, Smith J, Stuart S, Turak E, Veron JEN, Wallace C, Weil E, Wood E (2008) One-third of reef-building corals face elevated extinction risk from climate change and local impacts. Science 321:560–563
CAS
PubMed
Google Scholar
Chabanet P (2002) Coral reef fish communities of Mayotte (western Indian Ocean) two years after the impact of the 1998 bleaching event. Mar Freshw Res 53:107–114
Google Scholar
Cheal AJ, Emslie M, MacNeil A, Miller I, Sweatman H (2013) Spatial variation in the functional characteristics of herbivorous fish communities and the resilience of coral reefs. Ecol Appl 23:174–188
PubMed
Google Scholar
Choat JH, Clements KD, Robbins WD (2002) The trophic status of herbivorous fishes on coral reefs I: Dietary analyses. Mar Biol 140:613–623
CAS
Google Scholar
Choat JH, Robbins WD, Clements KD (2004) The trophic status of herbivorous fishes on coral reefs II. Food processing modes and trophodynamics. Mar Biol 145:445–454
Google Scholar
Clements KD, Choat JH (1995) Fermentation in Tropical Marine Herbivorous Fishes. Physiol Zool 68:355–378
CAS
Google Scholar
Clements KD, Raubenheimer D, Choat JH (2009) Nutritional ecology of marine herbivorous fishes: ten years on. Funct Ecol 23:79–92
Google Scholar
Costantini F, Rossi S, Pintus E, Cerrano C, Gili JM, Abbiati M (2011) Low connectivity and declining genetic variability along a depth gradient in Corallium rubrum populations. Coral Reefs 30:991–1003
Google Scholar
Crossman D, Choat JH, Clements KD, Hardy T, McConochie J (2001) Detritus as food for grazing fishes on coral reefs. Limnol Oceanogr 46:1596–1605
Google Scholar
Ellis D, DeMartini E (1995) Evaluation of a video camera technique for indexing abundances of juvenile pink snapper, Pristipomoides filamentosus, and other Hawaiian insular shelf fishes. Fish Bull 93:67–77
Google Scholar
Fisher R, Wilson SK, Sin TM, Lee AC, Langlois TJ (2018) A simple function for full-subsets multiple regression in ecology with R. Ecol Evol 8:6104–6113
PubMed
PubMed Central
Google Scholar
Fox RJ, Bellwood DR (2007) Quantifying herbivory across a coral reef depth gradient. Mar Ecol Prog Ser 339:49–59
Google Scholar
Fox RJ, Sunderland TL, Hoey AS, Bellwood DR (2009) Estimating ecosystem function: contrasting roles of closely related herbivorous rabbitfishes (Siganidae) on coral reefs. Mar Ecol Prog Ser 385:261–269
Google Scholar
Fulton EA (2011) Interesting times: winners, losers, and system shifts under climate change around Australia. ICES J Mar Sci 68:1329–1342
Google Scholar
Garpe KC, Yahya SAS, Lindahl U, Ohman MC (2006) Long-term effects of the 1998 coral bleaching event on reef fish assemblages. Mar Ecol Prog Ser 315:237–247
Google Scholar
Gilby BL, Tibbetts IR, Stevens T (2016) Low functional redundancy and high variability in Sargassum browsing fish populations in a subtropical reef system. Mar Freshw Res 68:331–341
Google Scholar
Goetze JS, Langlois TJ, McCarter J, Simpfendorfer CA, Hughes A, Leve JT, Jupiter SD (2018) Drivers of reef shark abundance and biomass in the Solomon Islands. PlosONE 13:e0200960
Google Scholar
Graham NAJ, Cinner JE, Norström AV, Nyström M (2014) Coral reefs as novel ecosystems: embracing new futures. Curr Opin Environ Sustain 7:9–14
Google Scholar
Green AL, Bellwood DR (2009) Monitoring functional groups of herbivorous reef fishes as indicators of coral reef resilience- A practical guide for coral reef managers in the Asia Pacific region. IUCN working group on Climate Change and Coral Reefs, IUCN, Gland, Switzerland
Google Scholar
Harvey ES, Cappo M, Butler JJ, Hall N, Kendrick GA (2007) Bait attraction affects the performance of remote underwater video stations in assessment of demersal fish community structure. Mar Ecol Prog Ser 350:245–254
Google Scholar
Heenan A, Williams ID (2013) Monitoring herbivorous fishes as indicators of coral reef resilience in American Samoa. PLoS ONE 8:e79604
CAS
PubMed
PubMed Central
Google Scholar
Heenan A, Hoey AS, Williams GJ, Williams ID (2016) Natural bounds on herbivorous coral reef fishes. Proc R Soc B Biol Sci 283:20161716
Google Scholar
Henderson CJ, Olds AD, Lee SY, Gilby BL, Maxwell PS, Connolly RM, Stevens T (2017) Marine reserves and seascape context shape fish assemblages in seagrass ecosystems. Mar Ecol Prog Ser 566:135–144
Google Scholar
Heyward A, Wakeford M, Currey-Randall L, Colquhoun J, Galaiduk R, Fisher R, Menendez P, Case M, Radford B, Stowar M, Vaughan B, Cure K, Birt M (2018) Quantitative information on the abundance, diversity and temporal variability of benthos and associated fish – Browse Island reef. Australian Institute of Marine Science, Perth, Australia
Google Scholar
Hijmans RJ, van Etten J (2012) raster: Geographic analysis and modeling with raster data. R package version 2.0–12
Hoey AS, Bellwood DR (2008) Cross-shelf variation in the role of parrotfishes on the great barrier reef. Coral Reefs 27:37–47
Google Scholar
Holmes KW, Van Niel KP, Radford B, Kendrick GA, Grove SL (2008) Modelling distribution of marine benthos from hydroacoustics and underwater video. Cont Shelf Res 28:1800–1810
Google Scholar
Hughes TP, Bellwood DR, Folke C, Steneck RS, Wilson J (2005) New paradigms for supporting the resilience of marine ecosystems. Trends Ecol Evol 20:380–386
PubMed
Google Scholar
Hughes TP, Rodrigues MJ, Bellwood DR, Ceccarelli D, Hoegh-Guldberg O, McCook L, Moltschaniwskyj N, Pratchett MS, Steneck RS, Willis B (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Curr Biol 17:360–365
CAS
PubMed
Google Scholar
Johansson CL, Bellwood DR, Depczynski M (2012) The importance of live coral for small-sized herbivorous reef fishes in physically challenging environments. Mar Freshw Res 63:672–679
Google Scholar
Kahng SE, Spalding HL, Brokovich E, Wagner D, Weil E, Hinderstein L, Toonen RJ (2010) Community ecology of mesophotic coral reef ecosystems. Coral Reefs 29:255–275
Google Scholar
Langlois TJ, Harvey ES, Meeuwig JJ (2012) Strong direct and inconsistent indirect effects of fishing found using stereo-video: Testing indicators from fisheries closures. Ecol Indic 23:524–534
Google Scholar
Langlois TJ, Harvey E, Fitzpatrick B, Meeuwig J, Shedrawi G, Watson D (2010) Cost-efficient sampling of fish assemblages: comparison of baited video stations and diver video transects. Aquat Biol 9:155–168
Google Scholar
Langlois TJ, Bellchambers L, Fisher R, Shiell G, Goetze J, Fullwood L, Evans S, Konzewitsch N, Harvey ES, Pember M (2017) Investigating ecosystem processes using targeted fisheries closures: can small-bodied invertivore fish be used as indicators for the effects of western rock lobster fishing? Mar Freshw Res 68:1251–1259
Google Scholar
Legendre P, Anderson MJ (1999) Distance-based redundancy analysis: testing multispecies responses in multifactorial ecological experiments. Ecol Monogr 69:1–24
Google Scholar
Lehmann A, Overton JM, Leathwick JR (2002) GRASP: generalized regression analysis and spatial prediction. Ecol Modell 157:189–207
Google Scholar
Leichter JJ, Stokes MD, Genovese SJ (2008) Deep water macroalgal communities adjacent to the Florida Keys reef tract. Mar Ecol Prog Ser 356:123–138
Google Scholar
Lesser MP, Slattery M (2011) Phase shift to algal dominated communities at mesophotic depths associated with lionfish (Pterois volitans) invasion on a Bahamian coral reef. Biol Invasions 13:1855–1868
Google Scholar
Lindfield SJ, Harvey ES, Halford AR, Mcilwain JL (2016) Mesophotic depths as refuge areas for fishery-targeted species on coral reefs. Coral Reefs 35:125–137
Google Scholar
Lowe JR, Williamson DH, Ceccarelli DM, Evans RD, Russ GR (2019) Responses of coral reef wrasse assemblages to disturbance and marine reserve protection on the great barrier reef. Mar Biol 166:1–21
Google Scholar
McLean DL, Vaughan BI, Malseed BE, Taylor MD (2020) Fish-habitat associations on a subsea pipeline within an Australian Marine Park. Mar Environ Res 153:104813
CAS
Google Scholar
Nyström M, Folke C, Moberg F (2000) Coral reef disturbance and resilience in a human-dominated environment. Trends Ecol Evol 15:413–417
PubMed
Google Scholar
Perry AL, Low PJ, Ellis JR, Reynolds JD (2005) Climate change and distribution shifts in marine fishes. Science 308:1912–1915
CAS
PubMed
Google Scholar
Pinheiro H, Goodbody-Gringley G, Jessup M, Shepherd B, Chequer A, Rocha L (2016) Upper and lower mesophotic coral reef fish communities evaluated by underwater visual censuses in two Caribbean locations. Coral Reefs 35:139–151
Google Scholar
Poloczanska ES, Burrows MT, Brown CJ, Garcia J, Halpern BS, Hoegh-guldberg O, Kappel CV, Moore PJ, Richardson AJ, Schoeman DS, Sydeman WJ (2016) Responses of marine organisms to climate change across oceans. Front Mar Sci 3:1–21
Google Scholar
Potts JM, Elith J (2006) Comparing species abundance models. Ecol Modell 199:153–163
Google Scholar
Puk LD, Ferse SCA, Wild C (2016) Patterns and trends in coral reef macroalgae browsing: a review of browsing herbivorous fishes of the Indo-Pacific. Rev Fish Biol Fish 26:53–70
Google Scholar
R Development Core Team R (2014) R: A language and environment for statistical computing. R Found Stat Comput 1:409
Google Scholar
Rocha LA, Pinheiro HT, Shepherd B, Papastamatiou YP, Luiz O, Pyle R, Bongaerts P (2018) Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs. Science 361:281–284
CAS
PubMed
Google Scholar
Ruppert JL, Travers MJ, Smith LL, Fortin M-J, Meekan MG (2013) Caught in the middle: combined impacts of shark removal and coral loss on the fish communities of coral reefs. PLoS ONE 8:e74648
CAS
PubMed
PubMed Central
Google Scholar
Russ GR (2003) Grazer biomass correlates more strongly with production than with biomass of algal turfs on a coral reef. Coral Reefs 22:63–67
Google Scholar
Russell BD, Connell SD (2005) A novel interaction between nutrients and grazers alters relative dominance of marine habitats. Mar Ecol Prog Ser 289:5–11
CAS
Google Scholar
Sagarin RD, Gaines SD, Gaylord B (2006) Moving beyond assumptions to understand abundance distributions across the ranges of species. Trends Ecol Evol 21:524–530
PubMed
Google Scholar
Smith T, Glynn P, Maté J, Toth L, Gyory J (2014) A depth refugium from catastrophic coral bleaching prevents regional extinction. Ecology 95:1663–1673
PubMed
Google Scholar
Stefanoudis PV, Gress E, Pitt JM, Smith SR, Kincaid T, Rivers M, Andradi-Brown DA, Rowlands G, Woodall LC, Rogers AD (2019) Depth-dependent structuring of reef fish assemblages from the shallows to the rariphotic zone. Front Mar Sci 6:1–16
Google Scholar
Steneck RS, David R, Hay ME (2017) Herbivory in the marine realm. Curr Biol 27:484–489
Google Scholar
Taylor BM, Benkwitt CE, Choat JH, Clements KD, Graham NAJ, Meekan MG (2019) Synchronous biological feedbacks in parrotfishes associated with pantropical coral bleaching. Glob Chang Biol 26:1285–1294
PubMed
Google Scholar
Thibaut LM, Connolly SR, Sweatman HP (2012) Diversity and stability of herbivorous fishes on coral reefs. Ecology 93:891–901
PubMed
Google Scholar
Van Oppen MJH, Bongaerts P, Underwood J, Peplow LM, Coopers TF (2011) The role of deep reefs in shallow reef recovery: an assessment of vertical connectivity in a brooding coral from west and east Australia. Mol Ecol 20:1647–1660
PubMed
Google Scholar
Vaz A, Paris C, Olascoaga M, Kourafalou V, Kang H, Reed J (2016) The perfect storm: Match-mismatch of bio-physical events drives larval reef fish connectivity between Pulley Ridge mesophotic reef and the Florida Keys. Cont Shelf Res 125:136–146
Google Scholar
Venegas RM, Oliver T, Liu G, Heron SF, Clark J, Pomeroy N, Young C, Eakin MC, Brainard RE (2019) The Rarity of Depth Refugia from Coral Bleaching Heat Stress in the Western and Central Pacific Islands. Sci Rep 9:19710
CAS
PubMed
PubMed Central
Google Scholar
Vercelloni J, Liquet B, Kennedy EV, González-Rivero M, Caley MJ, Peterson EE, Puotinen M, Hoegh-Guldberg O, Mengersen K (2020) Forecasting intensifying disturbance effects on coral reefs. Glob Chang Biol 26:2785–2797
PubMed
Google Scholar
Vergés A, Bennett S, Bellwood DR (2012) Diversity among Macroalgae-Consuming Fishes on Coral Reefs: A Transcontinental Comparison. PLoS ONE 7:e45543
PubMed
PubMed Central
Google Scholar
Walker BH (1992) Biodiversity and Ecological Redundancy Cons Biol 6:18–23
Google Scholar
Watson DL, Harvey ES, Fitzpatrick BM, Langlois TJ, Shedrawi G (2010) Assessing reef fish assemblage structure: How do different stereo-video techniques compare? Mar Biol 157:1237–1250
Google Scholar
Willis T, Babcock R (2000) A baited underwater video system for the determination of relative density of carnivorous reef fish. Mar Freshw Res 51:755–763
Google Scholar
Wilson SK, Graham NAJ, Polunin NV (2007) Appraisal of visual assessments of habitat complexity and benthic composition on coral reefs. Mar Biol 151:1069–1076
Google Scholar
Wilson SK, Graham NAJ, Pratchett MS, Jones GP, Plunin NVC (2006) Multiple disturbances and the global degradation of coral reefs: are reef fishes at risk or resilient? Glob Chang Biol 12:2220–2234
Google Scholar
Wismer S, Hoey AS, Bellwood DR (2009) Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass. Mar Ecol Prog Ser 376:45–54
Google Scholar