Alvarez-Filip L, Gill JA, Dulvy NK (2011) Complex reef architecture supports more small-bodied fishes and longer food chains on Caribbean reefs. Ecosphere 2:1–17
Article
Google Scholar
Alvarez-Filip L, Carricart-Ganivet JP, Horta-Puga G, Iglesias-Prieto R (2013) Shifts in coral-assemblage composition do not ensure persistence of reef functionality. Sci Rep 3:3486
Article
PubMed
PubMed Central
Google Scholar
Bagenal TB, Tesch FW (1978) Age and growth. In: Bagenal TB (ed) Methods for assessment of fish production in fresh water. Blackwell Scientific Publications, Oxford
Google Scholar
Berumen ML, Pratchett MS, McCormick MI (2005) Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae). Mar Ecol Prog Ser 287:217–227
Article
Google Scholar
Beukers JS, Jones GP (1997) Habitat complexity modifes the impact of piscivores on a coral reef fish population. Oecologia 114:50–59
Article
Google Scholar
Beukers-Stewart BD, Jones GP (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. J Exp Mar Bio Ecol 299:155–184
Article
Google Scholar
Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37:911–917
CAS
Article
PubMed
Google Scholar
Brandt JS, Haynes MA, Kuemmerle T, Waller DM, Radeloff VC (2013) Regime shift on the roof of the world: alpine meadows converting to shrublands in the southern Himalayas. Biol Conserv 158:116–127
Article
Google Scholar
Buitenwerf R, Bond WJ, Stevens N, Trollope WSW (2012) Increased tree densities in South African savannas: > 50 years of data suggests CO2 as a driver. Glob Chang Biol 18:675–684
Article
Google Scholar
Byrnes JE, Reed DC, Cardinale BJ, Cavanaugh KC, Holbrook SJ, Schmitt RJ (2011) Climate-driven increases in storm frequency simplify kelp forest food webs. Glob Chang Biol 17:2513–2524
Article
Google Scholar
Chan TTC, Sadovy Y (2002) Reproductive biology, age and growth in the chocolate hind, Cephalopholis boenak (Bloch, 1790), in Hong Kong. Mar Freshw Res 53:791–803
Article
Google Scholar
Cinner JE, McClanahan TR, Graham NAJ, Pratchett MS, Wilson SK, Raina JB (2009) Gear-based fisheries management as a potential adaptive response to climate change and coral mortality. J Appl Ecol 46:724–732
Article
Google Scholar
Cinner JE, Huchery C, Darling ES, Humphries AT, Graham NAJ, Hicks CC, Marshall N, McClanahan TR (2013) Evaluating social and ecological vulnerability of coral reef fisheries to climate change. PLoS One 8:e74321
CAS
Article
PubMed
PubMed Central
Google Scholar
Cohen LA, Pichegru L, Grémillet D, Coetzee J, Upfold L, Ryan PG (2014) Changes in prey availability impact the foraging behaviour and fitness of Cape gannets over a decade. Mar Ecol Prog Ser 505:281–293
Article
Google Scholar
Coker DJ, Wilson SK, Pratchett MS (2014) Importance of live coral habitat for reef fishes. Rev Fish Biol Fish 24:89–126
Article
Google Scholar
Darling ES, McClanahan TR, Côté IM (2013) Life histories predict coral community disassembly under multiple stressors. Glob Chang Biol 19:1930–1940
Article
PubMed
Google Scholar
Darling ES, Graham NAJ, Januchowski-Hartley FA, Nash KL, Pratchett MS, Wilson SK (2017) Relationships between structural complexity, coral traits, and reef fish assemblages. Coral Reefs 36:561–575
Article
Google Scholar
DeMartini EE, Anderson TW, Kenyon JC, Beets JP, Friedlander AM (2010) Management implications of juvenile reef fish habitat preferences and coral susceptibility to stressors. Mar Freshw Res 61:532–540
CAS
Article
Google Scholar
Duffy JE, Lefcheck JS, Stuart-Smith RD, Navarrete SA, Edgar GJ (2016) Biodiversity enhances reef fish biomass and resistance to climate change. Proc Natl Acad Sci U S A 113:6230–6235
CAS
Article
PubMed
PubMed Central
Google Scholar
Fabina NS, Baskett ML, Gross K (2015) The differential effects of increasing frequency and magnitude of extreme events on coral populations. Ecol Appl 25:1534–1545
Article
PubMed
Google Scholar
Feary DA, McCormick MI, Jones GP (2009) Growth of reef fishes in response to live coral cover. J Exp Mar Bio Ecol 373:45–49
Article
Google Scholar
Froese R, Pauly D (2016) FishBase, www.fishbase.org, version 10/2016
Great Barrier Reef Marine Park Authority (2014) Great Barrier Reef Outlook Report 2014. GBRMPA, Townville
Google Scholar
Graham NAJ (2014) Habitat complexity: coral structural loss leads to fisheries declines. Curr Biol 24:R359–R361
CAS
Article
PubMed
Google Scholar
Graham NAJ, Nash KL (2013) The importance of structural complexity in coral reef ecosystems. Coral Reefs 32:315–326
Article
Google Scholar
Graham NAJ, Cinner JE, Norström AV, Nyström M (2014) Coral reefs as novel ecosystems: embracing new futures. Curr Opin Environ Sustain 7:9–14
Article
Google Scholar
Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Robinson J, Bijoux JP, Daw TM (2007) Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems. Conserv Biol 21:1291–1300
Article
PubMed
Google Scholar
Gross K, Cardinale BJ, Fox JW, Gonzalez A, Loreau M, Polley HW, Reich PB, van Ruijven J, Wayne Polley H, Reich PB, van Ruijven J (2014) Species richness and the temporal stability of biomass production: a new analysis of recent biodiversity experiments. Am Nat 183:1–12
Article
PubMed
Google Scholar
Grottoli AG, Rodrigues LJ, Palardy JE (2006) Heterotrophic plasticity and resilience in bleached corals. Nature 440:1186–1189
CAS
Article
PubMed
Google Scholar
Hempson TN, Graham NA, MacNeil MA, Bodin N, Wilson SK (2017a) Regime shifts shorten food chains for mesopredators with potential sublethal effects. Func Ecol. https://doi.org/10.1111/1365-2435.13012
Hempson TN, Graham NA, MacNeil MA, Hoey AS, Wilson SK (2017b) Ecosystem regime shifts disrupt trophic structure. Ecol Appl. https://doi.org/10.1002/eap.1639
Hempson TN, Graham NA, MacNeil MA, Williamson DH, Jones GP, Almany GR (2017c) Coral reef mesopredators switch prey, shortening food chains, in response to habitat degradation. Ecol Evol 7:2626–2635
Article
PubMed
PubMed Central
Google Scholar
Hixon MA, Beets JP (1993) Predation, prey refuges, and the structure of coral-reef fish assemblages. Ecol Monogr 63:77–101
Article
Google Scholar
Hoegh-Guldberg O, Bruno JF (2010) The impact of climate change on the world’s marine ecosystems. Science 328:1523–1528
CAS
Article
PubMed
Google Scholar
Hoegh-Guldberg O, Mumby PJ, Hooten AJ, Steneck RS, Greenfield P, Gomez E, Harvell CD, Sale PF, Edwards AJ, Caldeira K, Knowlton N, Eakin CM, Iglesias-Prieto R, Muthiga N, Bradbury RH, Dubi A, Hatziolos ME (2007) Coral reefs under rapid climate change and ocean acidification. Science 318:1737–1742
CAS
Article
PubMed
Google Scholar
Holbrook SJ, Schmitt RJ (2002) Competition for shelter space causes density-dependent predation mortality in damselfishes. Ecology 83:2855–2868
Article
Google Scholar
Hughes TP, Kerry JT, Álvarez-Noriega M, Álvarez-Romero JG, Anderson KD, Baird AH, Babcock RC, Beger M, Bellwood DR, Berkelmans R, Bridge TC, Butler IR, Byrne M, Cantin NE, Comeau S, Connolly SR, Cumming GS, Dalton SJ, Diaz-Pulido G, Eakin CM, Figueira WF, Gilmour JP, Harrison HB, Heron SF, Hoey AS, Hobbs J-PA, Hoogenboom MO, Kennedy EV, Kuo C-Y, Lough JM, Lowe RJ, Liu G, McCulloch MT, Malcolm HA, McWilliam MJ, Pandolfi JM, Pears RJ, Pratchett MS, Schoepf V, Simpson T, Skirving WJ, Sommer B, Torda G, Wachenfeld DR, Willis BL, Wilson SK (2017) Global warming and mass bleaching of corals. Nature 543:373–377
CAS
Article
PubMed
Google Scholar
Jones GP, McCormick MI (2002) Numerical and energetic processes in the ecology of coral reef fishes. In: Sale PF (ed) Coral reef fishes: dynamics and diversity in a complex ecosystem. Academic Press, San Diego, pp 221–238
Chapter
Google Scholar
Jonsson B, Jonsson N, Finstad AG (2013) Effects of temperature and food quality on age and size at maturity in ectotherms: an experimental test with Atlantic salmon. J Anim Ecol 82:201–210
Article
PubMed
Google Scholar
Kerry JT, Bellwood DR (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs 31:415–424
Article
Google Scholar
Kok JE, Graham NAJ, Hoogenboom MO (2016) Climate-driven coral reorganisation influences aggressive behaviour in juvenile coral-reef fishes. Coral Reefs 35:473–483
Article
Google Scholar
Kokita T, Nakazono A (2001) Rapid response of an obligately corallivorous filefish Oxymonacanthus longirostris (Monacanthidae) to a mass coral bleaching event. Coral Reefs 20:155–158
Article
Google Scholar
Legović T (1989) Predation in food webs. Ecol Modell 48:267–276
Article
Google Scholar
Loya Sakai, Yamazato Nakano, Van Sambali W (2001) Coral bleaching: the winners and the losers. Ecol Lett 4:122–131
Article
Google Scholar
Luckhurst BE, Luckhurst K (1978) Analysis of the influence of substrate variables on coral reef fish communities. Mar Biol 49:317–323
Article
Google Scholar
MacNeil MA, Drouillard KG, Fisk AT (2006) Variable uptake and elimination of stable nitrogen isotopes between tissues in fish. Can J Fish Aquat Sci 63:345–353
CAS
Article
Google Scholar
Marshall PA, Baird AH (2000) Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa. Coral Reefs 19:155–163
Article
Google Scholar
McCann KS (2000) The diversity–stability debate. Nature 405:228–233
CAS
Article
PubMed
Google Scholar
McClanahan TR, Ateweberhan M, Graham NAJ, Wilson SK, Ruiz Sebastiàn C, Guillaume MMM, Bruggemann JH (2007) Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction. Mar Ecol Prog Ser 337:1–13
Article
Google Scholar
McClanahan TR, Graham NAJ, MacNeil MA, Muthiga NA, Cinner JE, Bruggemann JH, Wilson SK (2011) Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries. Proc Natl Acad Sci U S A 108:17230–17233
CAS
Article
PubMed
PubMed Central
Google Scholar
Milicich MJ, Doherty PJ (1994) Larval supply of coral reef fish populations—magnitude and synchrony of replenishment to Lizard Island, Great Barrier Reef. Mar Ecol Prog Ser 110:121–134
Article
Google Scholar
Mora C, Aburto-Oropeza O, Ayala-Bocos A, Ayotte PM, Banks S, Bauman AG, Beger M, Bessudo S, Booth DJ, Brokovich E, Brooks A, Chabanet P, Cinner JE, Cortés J, Cruz-Motta JJ, Cupul-Magaña A, DeMartini EE, Edgar GJ, Feary DA, Ferse SCA, Friedlander AM, Gaston KJ, Gough C, Graham NAJ, Green A, Guzman H, Hardt M, Kulbicki M, Letourneur Y, López-Pérez A, Loreau M, Loya Y, Martinez C, Mascareñas-Osorio I, Morove T, Nadon MO, Nakamura Y, Paredes G, Polunin NVC, Pratchett MS, Reyes Bonilla H, Rivera F, Sala E, Sandin SA, Soler G, Stuart-Smith R, Tessier E, Tittensor DP, Tupper M, Usseglio P, Vigliola L, Wantiez L, Williams I, Wilson SK, Zapata FA (2011) Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biol 9:e1000606
CAS
Article
PubMed
PubMed Central
Google Scholar
Mumby PJ, Dahlgren CP, Harborne AR, Kappel CV, Micheli F, Brumbaugh DR, Holmes KE, Mendes JM, Broad K, Sanchirico JN, Buch K, Box S, Stoffle RW, Gill AB (2006) Fishing, trophic cascades, and the process of grazing on coral reefs. Science 311:98–101
CAS
Article
PubMed
Google Scholar
Mumby PJ, Steneck RS, Edwards AJ, Ferrari R, Coleman R, Harborne AR, Gibson JP (2012) Fishing down a Caribbean food web relaxes trophic cascades. Mar Ecol Prog Ser 445:13–24
Article
Google Scholar
Munday PL, Jones GP, Pratchett MS, Williams AJ (2008) Climate change and the future for coral reef fishes. Fish Fish 9:261–285
Article
Google Scholar
Nash KL, Graham NAJ, Wilson SK, Bellwood DR (2013) Cross-scale habitat structure drives fish body size distributions on coral reefs. Ecosystems 16:478–490
Article
Google Scholar
Nash KL, Graham NAJ, Jennings S, Wilson SK, Bellwood DR, Angeler D (2016) Herbivore cross-scale redundancy supports response diversity and promotes coral reef resilience. J Appl Ecol 53:646–655
Article
Google Scholar
Nyström M, Graham NAJ, Lokrantz J, Norström AV (2008) Capturing the cornerstones of coral reef resilience: linking theory to practice. Coral Reefs 27:795–809
Article
Google Scholar
Ostaszewska T, Dabrowski K, Czumińska K, Olech W, Olejniczak M (2005) Rearing of pike-perch larvae using formulated diets—first success with starter feeds. Aquac Res 36:1167–1176
CAS
Article
Google Scholar
Pratchett MS, Wilson SK, Baird AH (2006) Declines in the abundance of Chaetodon butterflyfishes following extensive coral depletion. J Fish Biol 69:1269–1280
Article
Google Scholar
Pratchett MS, Hoey AS, Wilson SK (2014) Reef degradation and the loss of critical ecosystem goods and services provided by coral reef fishes. Curr Opin Environ Sustain 7:37–43
Article
Google Scholar
Pratchett MS, Gust N, Goby G, Klanten SO (2001) Consumption of coral propagules represents a significant trophic link between corals and reef fish. Coral Reefs 20:13–17
Article
Google Scholar
Pratchett MS, Wilson SK, Berumen ML, McCormick MI (2004) Sublethal effects of coral bleaching on an obligate coral feeding butterflyfish. Coral Reefs 23:352–356
Article
Google Scholar
Riegl B, Bruckner A, Coles SL, Renaud P, Dodge RE (2009) Coral reefs: threats and conservation in an era of global change. Ann N Y Acad Sci 1162:136–186
CAS
Article
PubMed
Google Scholar
Rogers A, Blanchard JL, Mumby PJ (2014) Vulnerability of coral reef fisheries to a loss of structural complexity. Curr Biol 24:1000–1005
CAS
Article
PubMed
Google Scholar
Shpigel M, Fishelson L (1989) Food habits and prey selection of three species of groupers from the genus Cephalopholis (Serranidae: Teleostei). Environ Biol Fishes 24:67–73
Article
Google Scholar
Stallings CD, Coleman FC, Koenig CC, Markiewicz DA (2010) Energy allocation in juveniles of a warm-temperate reef fish. Environ Biol Fishes 88:389–398
Article
Google Scholar
Stevenson RD, Woods WA (2006) Condition indices for conservation: new uses for evolving tools. Integr Comp Biol 46:1169–1190
CAS
Article
PubMed
Google Scholar
Syms C, Jones GP (2000) Disturbance, habitat structure, and the dynamics of a coral-reef fish community. Ecology 81:2714–2729
Article
Google Scholar
Welch BL (1947) The generalization of ‘Student’s’ problem when several different population variances are involved. Biometrika 34:28–35
CAS
PubMed
Google Scholar
Wernberg T, Bennett S, Babcock RC, de Bettignies T, Cure K, Depczynski M, Dufois F, Fromont J, Fulton CJ, Hovey RK, Harvey ES, Holmes TH, Kendrick GA, Radford B, Santana-Garcon J, Saunders BJ, Smale DA, Thomsen MS, Tuckett CA, Tuya F, Vanderklift MA, Wilson S (2016) Climate-driven regime shift of a temperate marine ecosystem. Science 353:169–172
CAS
Article
PubMed
Google Scholar
Van Woesik R, Sakai K, Ganase A, Loya Y (2011) Revisiting the winners and the losers a decade after coral bleaching. Mar Ecol Prog Ser 434:67–76
Article
Google Scholar