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Characterization and localization of the mproxl gene directly upstream of the mouse α-globin gene cluster: identification of a polymorphic direct repeat in the 5’UTR

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Abstract

The α-globin major regulatory element ( αMRE) positioned far upstream of the gene cluster is essential for the proper expression of the α -globin genes. Analysis of the human and mouse α-globin Upstream Flanking Regions ( αUFR) has identified three nonglobin genes in the order Distl-MPG-Proxl-α-globin. Further characterization of the whole region indicates that the aMRE and several other erythroid DNase HSSs are associated with the transcription unit of the Proxl gene. In this paper we describe the characterization and localization of the mouse Proxl cDNA and compare it with its human homolog, the -14 gene, and another human cDNA sequence named hProxl. Our results show a strong conservation between the -14 gene and the mouse Proxl gene with the exception of the first exon of the mProxl gene. This exon is absent in the -14 cDNA but is present and conserved in the human Proxl cDNA, indicating that the human -14/hProxl gene is alternatively spliced or transcribed. The mProxl gene encodes a predicted protein of 491 amino acids (aa) whose function is not known. In the 5’UTR of this gene, a 35-bp repeat (VNTR) is positioned, which is highly polymorphic among laboratory inbred mice (Mus domesticus). Our results strongly suggest that the mProxl VNTR arose during the divergence of M. spretus and M. domesticus. Besides its use in evolutionary studies and positional cloning, the mProxl VNTR might be invaluable for monitoring the expression of a transgenic mProxl gene. The cloning of the mProxl gene will be helpful to analyze its possible role on α-glo-bin as well on MPG expression in the mouse.

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References

  • Bernardi, G. (1989). The isochore organization of the human genome. Annu. Rev. Genet. 23, 637–661.

    Article  PubMed  CAS  Google Scholar 

  • Bemet, A., Sabatier, S., Picketts, D.J., Ouazana, R., Morle, F., Higgs, D.R., Godet, J. (1995). Targeted inactivation of the major positive regulatory element (HS-40) of the human alpha-globin locus. Blood 86, 1202–1211.

    Google Scholar 

  • Bouhassirra, E.E., Kielman, M.F., Gilman, J., Fabry, M.E., Suzaka, S., Leone, O., Gikas, E., Bernini, L.F., Nagel, R.L. (1996). Characterization of the mouse α-globin major regulatory element in MEL cells, transgenic animals and by homologous recombination in ES cells. In press.

  • Chakravaiti, D., Ibeanu, G.C., Tano,, Mitra, S. (1991). Cloning and expression in Escherichia coli of a human cDNA encoding the DNA repair protein N-methylpurine-DNA glycosylase. J. Biol. Chem. 266, 15710–15715.

    Google Scholar 

  • Craddock, CF., Vyas, P., Sharpe, J.A., Ayyub, H., Wood, W.G., Higgs,.(1995). Contrasting effects of alpha and beta globin regulatory elements on chromatin structure may be related to their different chromosomal environments. EMBO J 14, 1718–1726.

    PubMed  CAS  Google Scholar 

  • Ferris, S.D., Sage, R.D., Prager, E.M., Ritte, U., Wilson, A.C. (1983). Mitochondrial DNA evolution in mice. Genetics 105, 681–721.

    PubMed  CAS  Google Scholar 

  • Gourdon, G., Sharpe, J.A., Wells, D., Wood, W.G., Higgs, D.R. (1994). Analysis of a 70 kb segment of DNA containing the human zeta and alpha-globin genes linked to their regulatory element (HS-40) in transgenic mice. Nucleic Acids Res. 22, 4139–1147.

    Article  PubMed  CAS  Google Scholar 

  • Jarman, A.P., Wood, W.G., Sharpe, J.A., Gourdon, G., Ayyub, H., Higgs, D.R. (1991). Characterization of the major regulatory element upstream of the human α-globin gene cluster. Mol. Cell Biol. 11, 4679–4689.

    PubMed  CAS  Google Scholar 

  • Kielman, M.F., Smits, R., Devi, T.S., Fodde, R., Bernini, L.F. (1993). Homology of a 130-kb region enclosing the α-globin gene cluster, the α-locus controlling region, and two non-globin genes in human and mouse. Mamm. Genome 4, 314–323.

    Article  PubMed  CAS  Google Scholar 

  • Kielman, M.F., Smits, R., Bernini, L.F. (1994). Localization and characterization of the mouse α-globin locus control region. Genomics 21, 431–433.

    Article  PubMed  CAS  Google Scholar 

  • Kielman, M.F., Smits, R., Bernini, L.F. (1995). Structure of the mouse 3-methyladenine DNA glycosylase gene and exact localization upstream of the α-globin gene cluster on Chromosome 11. Mamm. Genome 6, 499–504.

    Article  PubMed  CAS  Google Scholar 

  • Kielman, M.F., Smits, R., Hof, I., Bernini, L.F. (1996). Characterization of the α-globin upstream flanking region in mouse and human reveals a gene dense area containing three independently controlled transcription units. Genomics 32, 341–351.

    Article  PubMed  CAS  Google Scholar 

  • Sharpe, J.A., Chan-Thomas, P.S., Lida, J., Ayyub, H., Wood, W.G., Higgs, D.R. (1992). Analysis of the human alpha globin upstream regulatory element (HS-40) in transgenic mice. EMBO J. 11, 4565–4572.

    PubMed  CAS  Google Scholar 

  • Vickers, M.A., Vyas, P., Harris, P.C., Simmons, D.L., Higgs, D.R. (1993). Structure of the human 3-methyladenine DNA glycosylase gene and localization close to the 16p telomere. Proc. Natl. Acad. Sci. USA 90, 3437–3441.

    Article  PubMed  CAS  Google Scholar 

  • Vyas, P., Vickers, M.A., Simmons, D.L., Ayyub, H., Craddock, CF., Higgs, D.R. (1992). Cis-acting sequences regulating expression of the human α-globin cluster lie within constitutively open chromatin. Cell 69, 781–793.

    Article  PubMed  CAS  Google Scholar 

  • Vyas, P., Vickers, M.A., Pickets, D.J., Higgs, D.R. (1995). Conservation of position and sequence of a novel, widely expressed gene containing the major human α-globin regulatory element. Genomics 29, 679–689.

    Article  PubMed  CAS  Google Scholar 

  • Wilkie, A.O.M., Higgs, D.R., Rack, K.A., Buckle, V.J., Spurr, N.K., Fishel-Godsian, N., Ceccherini, I., Brown, W.R.A., Harris, P.C. (1991). Stable length polymorphism of up to 260 kb at the tip of the short arm of human chromosome 16. Cell 64, 595–606.

    Article  PubMed  CAS  Google Scholar 

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Kielman, M.F., Barradeau, S., Smits, R. et al. Characterization and localization of the mproxl gene directly upstream of the mouse α-globin gene cluster: identification of a polymorphic direct repeat in the 5’UTR. Mammalian Genome 7, 877–880 (1996). https://doi.org/10.1007/s003359900260

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  • DOI: https://doi.org/10.1007/s003359900260

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