Abstract
We studied a polygenic region located on Chromosome (Chr) lq in Chinese hamster cells that is coamplified along with the AMPD2 gene. Previous sequence analysis identified both members of the GSTM family and the GNAI3 gene within a cloned 120-kb region surrounding the AMPD2 locus. We show here that the GNAT2 gene, which is inactive in the fibroblastic cells, lies within the 20 kb separating the transcriptionally active GNAI3 and AMPD2 genes. We map most gene ends by sequence comparison with human homologs; one is inferred from the presence of an unmethylated CpG island. This Chinese hamster locus corresponds to a region of conserved linkage between human Chr 1 (locus lp 13) and mouse Chr 3 (position 52.5 cM), where Gnai-3 and Gnat-2 have been mapped. The AMPD2 gene is presently unlocalized in human genome; its proposed position on mouse Chr 3 is at 53.4 cM. Our results, obtained by physical mapping, strongly suggest that the order and possibly the tight linkage of these genes are conserved on all three genomes.
Similar content being viewed by others
References
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J. (1990). A basic local alignment search tool. J. Mol. Biol. 215, 403–410.
Baron, B., Fernandez, M.-A., Toledo, F., LeRoscouët, D., Mayau, V., Martin, N., Buttin, G., Debatisse, M. (1994). The highly conserved Chinese hamster GNA13 gene maps less than 60 kb from the AMPD2 gene and lacks the intronic U6 snRNA presents in its human counterpart. Genomics 24, 288–294.
Bausch-Jurken, M.T., Mahnke-Zizelman, D.K., Morisaki, T., Sabina, R.L. (1992). Molecular cloning of AMPD deaminase isoform L. J. Biol. Chem. 267, 22407–22413.
Bird, A.P. (1986). CpG islands and the function of DNA methylation. Nature 321, 209–213.
Bird, A.P. (1987). CpG islands as gene markers in the vertebrate nucleus. Trends Genet. 3, 342–347.
Brison, O. (1993). Gene amplification and tumor progression. Biochim. Biophys. Acta 1155, 25–41.
Debatisse, M., Berry, M., Buttin, G. (1982). Stepwise isolation and properties of unstable Chinese hamster cell variants that overproduce adenylate deaminase. Mol. Cell. Biol. 2, 1346–1353.
Debatisse, M., Robert de Saint Vincent, B., Buttin, G. (1984). Expression of several amplified genes in an adenylate-deaminase overproducing variant of Chinese hamster fibroblasts. EMBO J. 3, 3123–3127.
Debatisse, M., Hyrien, O., Petit-Koskas, E., Robert de Saint Vincent, B., Buttin, G. (1986). Segregation and rearrangement of coamplified genes in different lineages of mutant cells that overproduce adenylate deaminase. Mol. Cell. Biol. 6, 1776–1781.
Debatisse, M., Saito, I., Buttin, G., Stark, G.R. (1988). Preferential amplification of rearranged sequences near amplified adenylate deaminase genes. Mol. Cell. Biol. 8, 17–24.
GCG (1996). Program Manual for the Wisconsin Package, Version 8, September 1996, Genetics Computer Group, 575 Science Drive, Madison, Wisconsin 53711, USA.
Genome Data Base (1995). Data used in preparing this paper were derived from the GDB(TM) Human Genome Data Base accessed on November 18, 1995.
Hamlin, J.L., Dijkwel, P.A. (1995). On the nature of replication origins in higher eukaryotes. Curr. Opin. Genet. Dev. 5, 153–161.
Heinikoff, S. (1984). Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28, 351–359.
Huberman, J.A. (1995). Prokaryotic and eukaryotic replicons. Cell 82, 535–542.
Kellems, R.E. (1992). Gene amplification in mammalian cells: a comprehensive guide. (New York: Marcel Dekker, Inc.).
Kingsmore, S.F., Moseley, W.S., Watson, M.L., Sabina, R.L., Holmes, E.W., Seidin, M.F. (1990). Long-range restriction site mapping of a synthenic segment conserved between human chromosome 1 and mouse chromosome 3. Genomics 7, 75–83.
Larsen, F., Gundersen, G., Lopez, R., Prydz, H. (1992). CpG islands as gene markers in the human genome. Genomics 13, 1095–1107.
Lledo, P.M., Homburger, V., Bockaert, J., Vincent, J.-D. (1992). Differential G-protein-mediated coupling of D2 dopamine receptors to K+ and Ca2+ currents in rat anterior pituitary cells. Neuron 8, 455–463.
Lunel, C, Buttin, G., Robert de Saint Vincent, B. (1992). A seryl-tRNA synthetase gene is coamplified with the adenylate deaminase 2 gene in coformycin resistant Chinese hamster fibroblasts. Nucleic Acids Res. 20, 2597.
Merkler, D.J., Wali, A.S., Taylor, J., Schramm, V.L. (1989). AMP deaminase from yeast. J. Biol. Chem. 264, 21422–21430.
Mineo, I., Clarke, P.R.H., Sabina, R., Holmes, E.W. (1990). A novel pathway for alternative splicing: identification of an RNA intermediate that generates an alternative 5′ splice donor site not present in the primary transcript of AMPD1. Mol. Cell. Biol. 10, 5271–5278.
Morris, A.T., Fong, S. (1993). Characterization of the gene for human cone transducin alpha subunit (GNAT2). Genomics 17, 442–448.
Mouse Genome Database (MGD) (July, 1995). Mouse Genome Informatics Project, The Jackson Laboratory, Bar Harbor, Maine. World Wide Web (URL: http://www.informatics.jag.org).
Mural, R.J., Einstein, J.R., Guan, X., Mann, R.C., Uberbacher, E.C. (1992). An artificial intelligence approach to DNA sequence feature recognition. Trends Biotechnol. 10, 66–69.
Robert de Saint Vincent, B., Hyrien, O., Debatisse, M., Buttin, G. (1990). Coamplification of µ class glutathione S-transferase genes and an adenylate deaminase gene in coformycin-resistant Chinese hamster fibroblasts. Eur. J. Biochem. 193, 19–24.
Saito, I., Groves, R., Giulotto, E., Rolfe, M., Stark, G.R. (1989). Evolution and stability of chromosomal DNA coamplified with the CAD gene. Mol. Cell. Biol. 9, 2445–2452.
Toledo, F., Smith, K.A., Buttin, G., Debatisse, M. (1992). The evolution of the amplified adenylate deaminase 2 domains in Chinese hamster cells suggests the sequential operation of different mechanisms of DNA amplification Mutat. Res. 276, 261–673.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Baron, B., Fernandez, M.A., Carignon, S. et al. GNAI3, GNAT2, AMPD2, GSTM are clustered in 120 kb of Chinese hamster Chromosome 1q. Mammalian Genome 7, 429–432 (1996). https://doi.org/10.1007/s003359900127
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/s003359900127