Abstract
DNA methylation is a stable and heritable epigenetic mechanism, of which the main functions are stabilizing the transcription of genes and promoting genetic conservation. In animals, the direct molecular inducers of DNA methylation mainly include histone covalent modification and non-coding RNA, whereas the fundamental regulators of DNA methylation are genetic and environmental factors. As is well known, competition is present everywhere in life systems, and will finally strike a balance that is optimal for the animal’s survival and reproduction. The same goes for the regulation of DNA methylation. Genetic and environmental factors, respectively, are responsible for the programmed and plasticity changes of DNA methylation, and keen competition exists between genetically influenced procedural remodeling and environmentally influenced plastic alteration. In this process, genetic and environmental factors collaboratively decide the methylation patterns of corresponding loci. DNA methylation alterations induced by environmental factors can be transgenerationally inherited, and exhibit the characteristic of Lamarckian inheritance. Further research on regulatory mechanisms and the environmental plasticity of DNA methylation will provide strong support for understanding the biological function and evolutionary effects of DNA methylation.
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References
Alabert C, Groth A (2012) Chromatin replication and epigenome maintenance. Nat Rev Mol Cell Biol 13:153–167. https://doi.org/10.1038/nrm3288
Ambrosi C, Manzo M, Baubec T (2017) Dynamics and context-dependent roles of DNA methylation. J Mol Biol 429:1459–1475. https://doi.org/10.1016/j.jmb.2017.02.008
Amouroux R et al (2016) De novo DNA methylation drives 5hmC accumulation in mouse zygotes. Nat Cell Biol 18:225–233. https://doi.org/10.1038/ncb3296
Anderson OS, Sant KE, Dolinoy DC (2012) Nutrition and epigenetics: an interplay of dietary methyl donors, one-carbon metabolism and DNA methylation. J Nutr Biochem 23:853–859. https://doi.org/10.1016/j.jnutbio.2012.03.003
Ando M et al (2019) Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers. Nat Commun 10:2188. https://doi.org/10.1038/s41467-019-09937-w
Atlasi Y, Stunnenberg HG (2017) The interplay of epigenetic marks during stem cell differentiation and development. Nat Rev Genet 18:643–658. https://doi.org/10.1038/nrg.2017.57
Auclair G, Weber M (2012) Mechanisms of DNA methylation and demethylation in mammals. Biochimie 94:2202–2211. https://doi.org/10.1016/j.biochi.2012.05.016
Barth TK, Imhof A (2010) Fast signals and slow marks: the dynamics of histone modifications. Trends Biochem Sci 35:618–626. https://doi.org/10.1016/j.tibs.2010.05.006
Barwick BG et al (2018) B cell activation and plasma cell differentiation are inhibited by de novo DNA methylation. Nat Commun 9:1900. https://doi.org/10.1038/s41467-018-04234-4
Baubec T, Schubeler D (2014) Genomic patterns and context specific interpretation of DNA methylation. Curr Opin Genet Dev 25:85–92. https://doi.org/10.1016/j.gde.2013.11.015
Bestor TH, Edwards JR, Boulard M (2015) Notes on the role of dynamic DNA methylation in mammalian development. PNAS 112:6796–6799. https://doi.org/10.1073/pnas.1415301111
Bhutani N, Burns DM, Blau HM (2011) DNA demethylation dynamics. Cell 146:866–872. https://doi.org/10.1016/j.cell.2011.08.042
Bird A (2002) DNA methylation patterns and epigenetic memory. Genes Dev 16:6–21. https://doi.org/10.1101/gad.947102
Blaschke K et al (2013) Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells. Nature 500:222–226. https://doi.org/10.1038/nature12362
BLUEPRINT consortium, (2016) Quantitative comparison of DNA methylation assays for biomarker development and clinical applications. Nat Biotechnol 34:726–737. https://doi.org/10.1038/nbt.3605
Bogdanović O, Lister R (2017) DNA methylation and the preservation of cell identity. Curr Opin Genet Dev 46:9–14. https://doi.org/10.1016/j.gde.2017.06.007
Bonasio R, Tu S, Reinberg D (2010) Molecular signals of epigenetic states. Science 330:612–616. https://doi.org/10.1126/science.1191078
Bourc’his D, Xu GL, Lin CS, Bollman B, Bestor TH (2001) Dnmt3L and the establishment of maternal genomic imprints. Science 294:2536–2539. https://doi.org/10.1126/science.1065848
Branco MR et al (2016) Maternal DNA methylation regulates early trophoblast development. Dev Cell 36:152–163. https://doi.org/10.1016/j.devcel.2015.12.027
Brandt B, Rashidiani S, Ban A, Rauch TA (2019) DNA methylation-governed gene expression in autoimmune arthritis. Int J Mol Sci 20(22):5646. https://doi.org/10.3390/ijms20225646
Cai Y et al (2017) Critical threshold levels of DNA methyltransferase 1 are required to maintain DNA methylation across the genome in human cancer cells. Genom Res 27:533–544. https://doi.org/10.1101/gr.208108.116
Calle-Fabregat C, Morante-Palacios O, Ballestar E (2020) Understanding the relevance of DNA methylation changes in immune differentiation and disease. Genes. https://doi.org/10.3390/genes11010110
Catania S et al (2020) Evolutionary persistence of DNA methylation for millions of years after ancient loss of a de novo methyltransferase. Cell 180:263-277.e220. https://doi.org/10.1016/j.cell.2019.12.012
Chao SB et al (2012) Heated spermatozoa: effects on embryonic development and epigenetics. Hum Reprod 27:1016–1024. https://doi.org/10.1093/humrep/des005
Charlton J et al (2018) Global delay in nascent strand DNA methylation. Nat Struct Mol Biol 25:327–332. https://doi.org/10.1038/s41594-018-0046-4
Chen L et al (2016) Genetic drivers of epigenetic and transcriptional variation in human immune cells. Cell 167:1398–1414. https://doi.org/10.1016/j.cell.2016.10.026
Chen Z, Yin Q, Inoue A, Zhang C, Zhang Y (2019) Allelic H3K27me3 to allelic DNA methylation switch maintains noncanonical imprinting in extraembryonic cells. Sci Adv 5:eaay7246. https://doi.org/10.1126/sciadv.aay7246
Christensen KE et al (2015) High folic acid consumption leads to pseudo-MTHFR deficiency, altered lipid metabolism, and liver injury in mice. Am J Clin Nutr 101:646–658. https://doi.org/10.3945/ajcn.114.086603
Ciccarone F, Tagliatesta S, Caiafa P, Zampieri M (2018) DNA methylation dynamics in aging: how far are we from understanding the mechanisms? Mech Ageing Dev 174:3–17. https://doi.org/10.1016/j.mad.2017.12.002
Clemens AW, Wu DY, Moore JR, Christian DL, Zhao G, Gabel HW (2020) MeCP2 represses enhancers through chromosome topology-associated DNA methylation. Mol Cell 77:279–293. https://doi.org/10.1016/j.molcel.2019.10.033
da Rocha ST, Gendrel AV (2019) The influence of DNA methylation on monoallelic expression. Essays Biochem 63:663–676. https://doi.org/10.1042/EBC20190034
Daxinger L, Whitelaw E (2012) Understanding transgenerational epigenetic inheritance via the gametes in mammals. Nat Rev Genet 13:153–162. https://doi.org/10.1038/nrg3188
Delacher M et al (2017) Genome-wide DNA-methylation landscape defines specialization of regulatory T cells in tissues. Nat Immunol 18:1160. https://doi.org/10.1038/ni.3799
DiTroia SP et al (2019) Maternal vitamin C regulates reprogramming of DNA methylation and germline development. Nature 573:271–275. https://doi.org/10.1038/s41586-019-1536-1
Doerfler W, Weber S, Naumann A (2018) Inheritable epigenetic response towards foreign DNA entry by mammalian host cells: a guardian of genomic stability. Epigenetics 13:1141–1153. https://doi.org/10.1080/15592294.2018.1549463
Douillet D et al (2020) Uncoupling histone H3K4 trimethylation from developmental gene expression via an equilibrium of COMPASS, Polycomb and DNA methylation. Nat Genet 52(6):615–625. https://doi.org/10.1038/s41588-020-0618-1
Du J, Johnson LM, Jacobsen SE, Patel DJ (2015) DNA methylation pathways and their crosstalk with histone methylation. Nat Rev Mol Cell Biol 16:519–532. https://doi.org/10.1038/nrm4043
Ehrlich M (2019) DNA hypermethylation in disease: mechanisms and clinical relevance. Epigenetics 14:1141–1163. https://doi.org/10.1080/15592294.2019.1638701
Ehrlich M, Lacey M (2013) DNA methylation and differentiation: silencing, upregulation and modulation of gene expression. Epigenomics 5:553–568. https://doi.org/10.2217/epi.13.43
ElGendy K, Malcomson FC, Lara JG, Bradburn DM, Mathers JC (2018) Effects of dietary interventions on DNA methylation in adult humans: systematic review and meta-analysis. Brit J Nutr 120:961–976. https://doi.org/10.1017/S000711451800243X
Engreitz JM, Ollikainen N, Guttman M (2016) Long non-coding RNAs: spatial amplifiers that control nuclear structure and gene expression. Nat Rev Mol Cell Biol 17:756. https://doi.org/10.1038/nrm.2016.126
Farlik M et al (2016) DNA methylation dynamics of human hematopoietic stem cell differentiation. Cell Stem Cell 19:808–822. https://doi.org/10.1016/j.stem.2016.10.019
Fatica A, Bozzoni I (2013) Long non-coding RNAs: new players in cell differentiation and development. Nat Rev Genet 15(1):7–21. https://doi.org/10.1038/nrg3606
Fedoroff NV (2012) Transposable elements, epigenetics, and genome evolution. Science 338:758–767. https://doi.org/10.1126/science.338.6108.758
Feil R, Fraga MF (2011) Epigenetics and the environment: emerging patterns and implications. Nat Rev Genet 13:97–109. https://doi.org/10.1038/nrg3142
Feng S, Jacobsen SE, Reik W (2010) Epigenetic reprogramming in plant and animal development. Science 330:622–627. https://doi.org/10.1126/science.1190614
Ferry L et al (2017) Methylation of DNA Ligase 1 by G9a/GLP recruits UHRF1 to replicating DNA and regulates DNA methylation. Mol Cell 67(550–565):e555. https://doi.org/10.1016/j.molcel.2017.07.012
Fetahu IS et al (2019) Epigenetic signatures of methylated DNA cytosine in Alzheimer’s disease. Sci Adv 5:eaaw2880. https://doi.org/10.1126/sciadv.aaw2880
Field AE, Robertson NA, Wang T, Havas A, Ideker T, Adams PD (2018) DNA methylation clocks in aging: categories, causes, and consequences. Mol Cell 71:882–895. https://doi.org/10.1016/j.molcel.2018.08.008
Finer S et al (2016) Is famine exposure during developmental life in rural Bangladesh associated with a metabolic and epigenetic signature in young adulthood? A historical cohort study. BMJ Open 6:e011768. https://doi.org/10.1136/bmjopen-201601176810.1136/bmjopen-2016-011768
Gahurova L et al (2017) Transcription and chromatin determinants of de novo DNA methylation timing in oocytes. Epigenet Chromatin 10:25. https://doi.org/10.1186/s13072-017-0133-5
Gao L et al (2018) Chromatin accessibility landscape in human early embryos and its association with evolution. Cell 173(248–259):e215. https://doi.org/10.1016/j.cell.2018.02.028
Gates LA, Foulds CE, O’Malley BW (2017) Histone marks in the ‘driver’s seat’: functional roles in steering the transcription cycle. Trends Biochem Sci 42:977–989. https://doi.org/10.1016/j.tibs.2017.10.004
Gifford CA et al (2013) Transcriptional and epigenetic dynamics during specification of human embryonic stem cells. Cell 153(5):1149–1163. https://doi.org/10.1016/j.cell.2013.04.037
Gokhman D et al (2020) Differential DNA methylation of vocal and facial anatomy genes in modern humans. Nat Commun 11:1189. https://doi.org/10.1038/s41467-020-15020-6
Greenberg MVC, Bourc’his D (2019) The diverse roles of DNA methylation in mammalian development and disease. Nat Rev Mol Cell Biol 20:590–607. https://doi.org/10.1038/s41580-019-0159-6
Grimm SA et al (2019) DNA methylation in mice is influenced by genetics as well as sex and life experience. Nat Commun 10:305. https://doi.org/10.1038/s41467-018-08067-z
Gu T-P et al (2011) The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477:606–610. https://doi.org/10.1038/nature10443
Guenther MG, Young RA (2010) Transcription. Repressive transcription. Science 329:150–151. https://doi.org/10.1126/science.1193995
Guil S, Esteller M (2012) Cis-acting noncoding RNAs: friends and foes. Nat Stru Mol Biol 19:1068–1075. https://doi.org/10.1038/nsmb.2428
Guttman M, Rinn JL (2012) Modular regulatory principles of large non-coding RNAs. Nature 482:339–346. https://doi.org/10.1038/nature10887
Hala D, Huggett DB, Burggren WW (2014) Environmental stressors and the epigenome. Drug Discov Today Technol 12:e3-8. https://doi.org/10.1016/j.ddtec.2012.05.004
Hanly DJ, Esteller M, Berdasco M (2018) Interplay between long non-coding RNAs and epigenetic machinery: emerging targets in cancer? Philos Trans R Soc Lond B Biol Sci 373(1748):20170074
Harrison JS et al (2016) Hemi-methylated DNA regulates DNA methylation inheritance through allosteric activation of H3 ubiquitylation by UHRF1. Elife 5:e17101. https://doi.org/10.7554/eLife.17101
Harvey ZH, Chen Y, Jarosz DF (2018) Protein-based inheritance: epigenetics beyond the chromosome. Mol Cell 69:195–202. https://doi.org/10.1016/j.molcel.2017.10.030
Hata K, Okano M, Lei H, Li E (2002) Dnmt3L cooperates with the Dnmt3 family of de novo DNA methyltransferases to establish maternal imprints in mice. Development 129:1983–1993
Hatada I et al (2006) Genome-wide profiling of promoter methylation in human. Oncogene 25:3059–3064. https://doi.org/10.1038/sj.onc.1209331
He YF et al (2011) Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333:1303–1307. https://doi.org/10.1126/science.1210944
He Y et al (2018) DNA methylation and regulatory elements during chicken germline stem cell differentiation. Stem Cell Rep 10:1793–1806. https://doi.org/10.1016/j.stemcr.2018.03.018
Henckel A, Chebli K, Kota SK, Arnaud P, Feil R (2012) Transcription and histone methylation changes correlate with imprint acquisition in male germ cells. EMBO J 31:606–615. https://doi.org/10.1038/emboj.2011.425
Henikoff S, Shilatifard A (2011) Histone modification: cause or cog? Trends Genet 27:389–396. https://doi.org/10.1016/j.tig.2011.06.006
Heyn H et al (2016) Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer. Genom Biol 17:11. https://doi.org/10.1186/s13059-016-0879-2
Hoang TT et al (2020) Epigenome-wide association study of DNA methylation and adult asthma in the agricultural lung health study. Eur Respir J 56(3):2000217. https://doi.org/10.1183/13993003.00217-2020
Hogg K, Price EM, Hanna CW, Robinson WP (2012) Prenatal and perinatal environmental influences on the human fetal and placental epigenome. Clin Pharmacol Ther 92:716–726. https://doi.org/10.1038/clpt.2012.141
Holmes L Jr, Lim A, Comeaux CR, Dabney KW, Okundaye O (2019) DNA methylation of candidate genes (ACE II, IFN-gamma, AGTR 1, CKG, ADD1, SCNN1B and TLR2) in essential hypertension: a systematic review and quantitative evidence synthesis. Int J Environ Res Public Health 16(23):4829. https://doi.org/10.3390/ijerph16234829
Horvath S, Raj K (2018) DNA methylation-based biomarkers and the epigenetic clock theory of ageing. Nat Rev Genet 19:371–384. https://doi.org/10.1038/s41576-018-0004-3
Huang X et al (2020) Association between gene promoter methylation of the one-carbon metabolism pathway and serum folate among patients with hyperhomocysteinemia. Eur J Clin Nutr 74(12):1677–1684. https://doi.org/10.1038/s41430-020-0657-9
Hughes AL, Kelley JR, Klose RJ (2020) Understanding the interplay between CpG island-associated gene promoters and H3K4 methylation. Biochim Biophys Acta Gene Regul Mech 1863(8):194567. https://doi.org/10.1016/j.bbagrm.2020.194567
Hui T et al (2018) High-resolution single-cell DNA methylation measurements reveal epigenetically distinct hematopoietic stem cell subpopulations stem. Cell Rep 11:578–592. https://doi.org/10.1016/j.stemcr.2018.07.003
Illum LRH, Bak ST, Lund S, Nielsen AL (2018) DNA methylation in epigenetic inheritance of metabolic diseases through the male germ line. J Mol Endocrinol 60:R39–R56. https://doi.org/10.1530/JME-17-0189
Iqbal MS, Rahman S, Haque MA, Bhuyan MJ, Faruque ASG, Ahmed T (2019) Lower intakes of protein, carbohydrate, and energy are associated with increased global DNA methylation in 2- to 3-year-old urban slum children in Bangladesh. Matern Child Nutr 15:e12815. https://doi.org/10.1111/mcn.12815
Ito S et al (2011) Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333:1300–1303. https://doi.org/10.1126/science.1210597
Iurlaro M, von Meyenn F, Reik W (2017) DNA methylation homeostasis in human and mouse development. Curr Opin Genet Dev 43:101–109. https://doi.org/10.1016/j.gde.2017.02.003
Izzo F et al (2020) DNA methylation disruption reshapes the hematopoietic differentiation landscape. Nat Genet 52:378–387. https://doi.org/10.1038/s41588-020-0595-4
Jablonka E (2012) Epigenetic variations in heredity and evolution. Clin Pharmacol Ther 92:683–688. https://doi.org/10.1038/clpt.2012.158
Jansz N (2019) DNA methylation dynamics at transposable elements in mammals. Essays Biochem 63:677–689. https://doi.org/10.1042/ebc20190039
Joe S, Nam H (2020) Prediction model construction of mouse stem cell pluripotency using CpG and non-CpG DNA methylation markers. BMC Bioinform 21:175. https://doi.org/10.1186/s12859-020-3448-3
Johnson ND, Conneely KN (2019) The role of DNA methylation and hydroxymethylation in immunosenescence. Ageing Res Rev 51:11–23. https://doi.org/10.1016/j.arr.2019.01.011
Jones PA, Takai D (2001) The role of DNA methylation in mammalian epigenetics. Science 293:1068–1070. https://doi.org/10.1126/science.1063852
Joo JE et al (2018) Heritable DNA methylation marks associated with susceptibility to breast cancer. Nat Commun 9:867. https://doi.org/10.1038/s41467-018-03058-6
Jozi M, Jafarpour F, Moradi R, Zadegan FG, Karbalaie K, Nasr-Esfahani MH (2020) Induced DNA hypomethylation by folic acid deprivation in bovine fibroblast donor cells improves reprogramming of somatic cell nuclear transfer embryos. Sci Rep 10:5076. https://doi.org/10.1038/s41598-020-61797-3
Jung H et al (2019) DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load. Nat Commun 10:4278. https://doi.org/10.1038/s41467-019-12159-9
Jurmeister P et al (2019) Machine learning analysis of DNA methylation profiles distinguishes primary lung squamous cell carcinomas from head and neck metastases. Sci Transl Med 11:eaaw8513. https://doi.org/10.1126/scitranslmed.aaw8513
Kadayifci FZ, Zheng S, Pan YX (2018) Molecular mechanisms underlying the link between diet and DNA methylation. Int J Mol Sci 19(12):4055. https://doi.org/10.3390/ijms19124055
Kader F, Ghai M, Maharaj L (2018) The effects of DNA methylation on human psychology. Behav Brain Res 346:47–65. https://doi.org/10.1016/j.bbr.2017.12.004
Kaelin WG Jr., McKnight SL (2013) Influence of metabolism on epigenetics and disease. Cell 153:56–69. https://doi.org/10.1016/j.cell.2013.03.004
Kaur G, Batra S (2020) Regulation of DNA methylation signatures on NF-kappaB and STAT3 pathway genes and TET activity in cigarette smoke extract-challenged cells/COPD exacerbation model in vitro. Cell Biol Toxicol 36(5):459–480. https://doi.org/10.1007/s10565-020-09522-8
Kelly KB et al (2016) Excess folic acid increases lipid storage, weight gain, and adipose tissue inflammation in high fat diet-fed rats. Nutrients 8(10):594. https://doi.org/10.3390/nu8100594
Kessler NJ, Waterland RA, Prentice AM, Silver MJ (2018) Establishment of environmentally sensitive DNA methylation states in the very early human embryo. Sci Adv 4:eaat2624. https://doi.org/10.1126/sciadv.aat2624
Kim M, Costello J (2017) DNA methylation: an epigenetic mark of cellular memory. Exp Mol Med 49:e322. https://doi.org/10.1038/emm.2017.10
Kim H, Wang X, Jin P (2018) Developing DNA methylation-based diagnostic biomarkers. J Genet Genom 45(2):87–97. https://doi.org/10.1016/j.jgg.2018.02.003
Klutstein M, Nejman D, Greenfield R, Cedar H (2016) DNA methylation in cancer and aging. Cancer Res 76:3446–3450. https://doi.org/10.1158/0008-5472.CAN-15-3278
Koch A et al (2018) Analysis of DNA methylation in cancer: location revisited. Nat Rev Clin Oncol 15(7):459–466. https://doi.org/10.1038/s41571-018-0004-4
Koopman-Verhoeff ME et al (2020) Genome-wide DNA methylation patterns associated with sleep and mental health in children: a population-based study. J Child Psychol Psychiatry 61(10):1061–1069. https://doi.org/10.1111/jcpp.13252
Kvist J, Goncalves Athanasio C, Shams Solari O, Brown JB, Colbourne JK, Pfrender ME, Mirbahai L (2018) Pattern of DNA methylation in daphnia: evolutionary perspective. Genome Biol Evol 10:1988–2007. https://doi.org/10.1093/gbe/evy155
Ladle BH et al (2016) De novo DNA methylation by DNA methyltransferase 3a controls early effector CD8+ T-cell fate decisions following activation. PNAS 113:10631–10636. https://doi.org/10.1073/pnas.1524490113
Langstein J, Milsom MD, Lipka DB (2018) Impact of DNA methylation programming on normal and pre-leukemic hematopoiesis. Semin Cancer Biol 51:89–100. https://doi.org/10.1016/j.semcancer.2017.09.008
Laporte M, LeLuyer J, Rougeux C, Dion-Côté AM, Krick M, Bernatchez L (2019) DNA methylation reprogramming, TE derepression, and postzygotic isolation of nascent animal species. Sci Adv 5:eaaw1644. https://doi.org/10.1126/sciadv.aaw1644
Law PP, Holland ML (2019) DNA methylation at the crossroads of gene and environment interactions. Essays Biochem 63:717–726. https://doi.org/10.1042/EBC20190031
Lawrence M, Daujat S, Schneider R (2016) Lateral thinking: how histone modifications regulate gene expression. Trends Genet 32:42–56. https://doi.org/10.1016/j.tig.2015.10.007
Lax E, Szyf M (2018) The role of DNA methylation in drug addiction: implications for diagnostic and therapeutics. Prog Mol Biol Transl Sci 157:93–104. https://doi.org/10.1016/bs.pmbts.2018.01.003
Lei Y, Huang YH, Goodell MA (2018) DNA methylation and de-methylation using hybrid site-targeting proteins. Genome Biol 19:187. https://doi.org/10.1186/s13059-018-1566-2
Lewsey MG et al (2016) Mobile small RNAs regulate genome-wide DNA methylation. PNAS 113:E801-810. https://doi.org/10.1073/pnas.1515072113
Li E, Zhang Y (2014) DNA methylation in mammals. CSH Perspect Biol 6:a019133. https://doi.org/10.1101/cshperspect.a019133
Li C et al (2018a) DNA methylation reprogramming of functional elements during mammalian embryonic development. Cell Discov 4:41. https://doi.org/10.1038/s41421-018-0039-9
Li L et al (2018b) Single-cell multi-omics sequencing of human early embryos. Nat Cell Biol 20:847–858. https://doi.org/10.1038/s41556-018-0123-2
Li M, D’Arcy C, Li X, Zhang T, Joober R, Meng X (2019) What do DNA methylation studies tell us about depression? A systematic review. Transl Psychiatry 9:68. https://doi.org/10.1038/s41398-019-0412-y
Lillycrop KA, Burdge GC (2014) Environmental challenge, epigenetic plasticity and the induction of altered phenotypes in mammals. Epigenomics 6:623–636. https://doi.org/10.2217/epi.14.51
Lister R et al (2009) Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462:315–322. https://doi.org/10.1038/nature08514
Liu X et al (2013) UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9. Nat Commun 4:1563. https://doi.org/10.1038/ncomms2562
Liu C, Jiao C, Wang K, Yuan N (2018a) DNA methylation and psychiatric disorders. Prog Mol Biol Transl Sci. 157:175–232. https://doi.org/10.1016/bs.pmbts.2018.01.006
Liu C et al (2018b) A DNA methylation biomarker of alcohol consumption. Mol Psyc 23:422–433. https://doi.org/10.1038/mp.2016.192
Lowe R et al (2018) Ageing-associated DNA methylation dynamics are a molecular readout of lifespan variation among mammalian species. Genom Biol 19:22. https://doi.org/10.1186/s13059-018-1397-1
Lu Z et al (2020) Locus-specific DNA methylation of Mecp2 promoter leads to autism-like phenotypes in mice. Cell Death Dis 11(2):85. https://doi.org/10.1038/s41419-020-2290-x
Luo C, Hajkova P, Ecker JR (2018) Dynamic DNA methylation: In the right place at the right time. Science 361:1336. https://doi.org/10.1126/science.aat6806
Luo C et al (2019) Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons. Elife 8:e40197. https://doi.org/10.7554/eLife.40197
Lyko F (2018) The DNA methyltransferase family: a versatile toolkit for epigenetic regulation. Nat Rev Genet 19:81–92. https://doi.org/10.1038/nrg.2017.80
Mahmood N, Rabbani SA (2017) DNA methylation and breast cancer: mechanistic and therapeutic applications. Trends Cancer Res 12:1–18
Marioni RE et al (2015) DNA methylation age of blood predicts all-cause mortality in later life. Genom Biol 16:25. https://doi.org/10.1186/s13059-015-0584-6
Martin EM, Fry RC (2018) Environmental influences on the epigenome: exposure-associated DNA methylation in human populations. Annu Rev Publ Health 39:309–333. https://doi.org/10.1146/annurev-publhealth-040617-014629
Mathot P et al (2017) DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment. Oncogenesis 6:e390. https://doi.org/10.1038/oncsis.2017.88
Matzke MA, Mosher RA (2014) RNA-directed DNA methylation: an epigenetic pathway of increasing complexity. Nat Rev Genet 15:394–408. https://doi.org/10.1038/nrg3683
McDade TW et al (2017) Social and physical environments early in development predict DNA methylation of inflammatory genes in young adulthood. PNAS 114:7611–7616. https://doi.org/10.1073/pnas.1620661114
McGinty JF (2012) The many faces of MeCP2. Neuropsychopharmacology 37:313–314. https://doi.org/10.1038/npp.2011.246
McNamara JM, Dall SR, Hammerstein P, Leimar O (2016) Detection vs. selection: integration of genetic, epigenetic and environmental cues in fluctuating environments. Ecol lett 19:1267–1276. https://doi.org/10.1111/ele.12663
Mehrmohamadi M, Mentch LK, Clark AG, Locasale JW (2016) Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism. Nat Commun 7:13666. https://doi.org/10.1038/ncomms13666
Melamed P, Yosefzon Y, David C, Tsukerman A, Pnueli L (2018) Tet enzymes, variants, and differential effects on function. Front Cell Dev Biol 6:22. https://doi.org/10.3389/fcell.2018.00022
Merkenschlager M, Odom DT (2013) CTCF and cohesin: linking gene regulatory elements with their targets. Cell 152:1285–1297. https://doi.org/10.1016/j.cell.2013.02.029
Miska EA, Ferguson-Smith AC (2016) Transgenerational inheritance: models and mechanisms of non–DNA sequence–based inheritance. Science 354(6308):59–63. https://doi.org/10.1126/science.aaf4945
Morselli M et al (2015) In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse. Elife 4:e06205. https://doi.org/10.7554/eLife.06205
Netto GJ et al (2008) Global DNA hypomethylation in intratubular germ cell neoplasia and seminoma, but not in nonseminomatous male germ cell tumors. Mod Pathol 21(11):1337–1344. https://doi.org/10.1038/modpathol.2008.127
Nicoglou A, Merlin F (2017) Epigenetics: a way to bridge the gap between biological fields. Stud Hist Philos Biol Biomed Sci 66:73–82. https://doi.org/10.1016/j.shpsc.2017.10.002
Niculescu MD, Lupu DS (2011) Nutritional influence on epigenetics and effects on longevity. Curr Opin Clin Nutr 14:35–40. https://doi.org/10.1097/MCO.0b013e328340ff7c
Nishiyama A et al (2020) Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nat Commun 11:1222. https://doi.org/10.1038/s41467-020-15006-4
Nishizawa M et al (2016) Epigenetic variation between human induced pluripotent stem cell lines is an indicator of differentiation capacity. Cell Stem Cell 19:341–354. https://doi.org/10.1016/j.stem.2016.06.019
Ooi SK et al (2007) DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA. Nature 448(7154):714–717. https://doi.org/10.1038/nature05987
Ortega-Recalde O, Hore Timothy A (2019) DNA methylation in the vertebrate germline: balancing memory and erasure. Essays Biochem 63:649–661. https://doi.org/10.1042/ebc20190038
Osborne AJ et al (2020) Genome-wide DNA methylation analysis of heavy cannabis exposure in a New Zealand longitudinal cohort. Transl Psychiatry 10:114. https://doi.org/10.1038/s41398-020-0800-3
Pan Y, Liu G, Zhou F, Su B, Li Y (2018) DNA methylation profiles in cancer diagnosis and therapeutics. Clin Exp Med 18:1–14. https://doi.org/10.1007/s10238-017-0467-0
Park JH, Kim SH, Lee MS, Kim MS (2017) Epigenetic modification by dietary factors: implications in metabolic syndrome. Mol Aspect Med 54:58–70. https://doi.org/10.1016/j.mam.2017.01.008
Pauwels S et al (2017) Dietary and supplemental maternal methyl-group donor intake and cord blood DNA methylation. Epigenetics 12:1–10. https://doi.org/10.1080/15592294.2016.1257450
Perez RF et al (2019) Longitudinal genome-wide DNA methylation analysis uncovers persistent early-life DNA methylation changes. J Transl Med 17:15. https://doi.org/10.1186/s12967-018-1751-9
Peschansky VJ, Wahlestedt C (2014) Non-coding RNAs as direct and indirect modulators of epigenetic regulation. Epigenetics 9:3–12. https://doi.org/10.4161/epi.27473
Prins GS et al (2017) Prostate cancer risk and DNA methylation signatures in aging rats following developmental BPA exposure: a dose-response analysis. Environ Health Persp 125:077007. https://doi.org/10.1289/EHP1050
Rasmussen KD, Helin K (2016) Role of TET enzymes in DNA methylation, development, and cancer. Genes Dev 30(7):733–750. https://doi.org/10.1101/gad.276568.115
Richard MA et al (2017) DNA methylation analysis identifies loci for blood pressure regulation. Am J Hum Genet 101:888–902. https://doi.org/10.1016/j.ajhg.2017.09.028
Richmond RC, Suderman M, Langdon R, Relton CL, Davey Smith G (2018) DNA methylation as a marker for prenatal smoke exposure in adults. Int J Epidem 47:1120–1130. https://doi.org/10.1093/ije/dyy091
Rondelet G, Dal Maso T, Willems L, Wouters J (2016) Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B. J Struct Biol 194:357–367. https://doi.org/10.1016/j.jsb.2016.03.013
Rose NR, Klose RJ (2014) Understanding the relationship between DNA methylation and histone lysine methylation. Biochem Biophys Acta 1839:1362–1372. https://doi.org/10.1016/j.bbagrm.2014.02.007
Rosen AD et al (2018) DNA methylation age is accelerated in alcohol dependence. Transl Psychiat 8:182. https://doi.org/10.1038/s41398-018-0233-4
Rothbart SB, Strahl BD (2014) Interpreting the language of histone and DNA modifications. Biochem Biophys Acta 1839:627–643. https://doi.org/10.1016/j.bbagrm.2014.03.001
Rothbart SB et al (2012) Association of UHRF1 with methylated H3K9 directs the maintenance of DNA methylation. Nat Struct Mol Biol 19:1155–1160. https://doi.org/10.1038/nsmb.2391
Sadahiro R et al (2020) Major surgery induces acute changes in measured DNA methylation associated with immune response pathways. Sci Rep 10:5743. https://doi.org/10.1038/s41598-020-62262-x
Saenz-de-Juano MD, Ivanova E, Billooye K, Herta AC, Smitz J, Kelsey G, Anckaert E (2019) Genome-wide assessment of DNA methylation in mouse oocytes reveals effects associated with in vitro growth, superovulation, and sexual maturity. Clin Epigenet 11:197. https://doi.org/10.1186/s13148-019-0794-y
Samblas M, Milagro FI, Martinez A (2019) DNA methylation markers in obesity, metabolic syndrome, and weight loss. Epigenetics 14:421–444. https://doi.org/10.1080/15592294.2019.1595297
Sanderson SM, Gao X, Z. D, W. LJ, (2019) Methionine metabolism in health and cancer: a nexus of diet and precision medicine. Nat Rev Cancer 19:625–637. https://doi.org/10.1038/s41568-019-0187-8
SanMiguel JM, Bartolomei MS (2018) DNA methylation dynamics of genomic imprinting in mouse development. Biol Reprod 99:252–262. https://doi.org/10.1093/biolre/ioy036
Saussenthaler S et al (2019) Epigenetic regulation of hepatic Dpp4 expression in response to dietary protein. J Nutr Biochem 63:109–116. https://doi.org/10.1016/j.jnutbio.2018.09.025
Scala G, Federico A, Palumbo D, Cocozza S, Greco D (2020) DNA sequence context as a marker of CpG methylation instability in normal and cancer tissues. Sci Rep 10:1721. https://doi.org/10.1038/s41598-020-58331-w
Schmitz RJ, Lewis ZA, Goll MG (2019) DNA methylation: shared and divergent features across eukaryotes. Trends Genet 35:818–827. https://doi.org/10.1016/j.tig.2019.07.007
Schübeler D (2015) Function and information content of DNA methylation. Nature 517:321–326. https://doi.org/10.1038/nature14192
Schuettengruber B, Chourrout D, Vervoort M, Leblanc B, Cavalli G (2007) Genome regulation by polycomb and trithorax proteins. Cell 128:735–745. https://doi.org/10.1016/j.cell.2007.02.009
Sendzikaite G, Kelsey G (2019) The role and mechanisms of DNA methylation in the oocyte. Essays Biochem 63:691–705. https://doi.org/10.1042/EBC20190043
Sendzikaite G, Hanna CW, Stewart-Morgan KR, Ivanova E, Kelsey G (2019) A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and growth retardation in mice. Nat Commun 10:1884. https://doi.org/10.1038/s41467-019-09713-w
Shafa M, Krawetz R, Rancourt DE (2010) Returning to the stem state: epigenetics of recapitulating pre-differentiation chromatin structure. BioEssays 32:791–799. https://doi.org/10.1002/bies.201000033
Sharma U, Rando OJ (2017) Metabolic inputs into the epigenome. Cell Metab 25:544–558. https://doi.org/10.1016/j.cmet.2017.02.003
Shen L et al (2019) Early-life exposure to severe famine is associated with higher methylation level in the IGF2 gene and higher total cholesterol in late adulthood: the Genomic Research of the Chinese Famine (GRECF) study. Clin Epigenet 11:88. https://doi.org/10.1186/s13148-019-0676-3
Skinner MK, Guerrero-Bosagna C, Haque MM (2015) Environmentally induced epigenetic transgenerational inheritance of sperm epimutations promote genetic mutations. Epigenetics 10:762–771. https://doi.org/10.1080/15592294.2015.1062207
Skinner MK et al (2018) Alterations in sperm DNA methylation, non-coding RNA and histone retention associate with DDT-induced epigenetic transgenerational inheritance of disease. Epigenet Chromatin 11(1):8. https://doi.org/10.1186/s13072-018-0178-0
Smith ZD et al (2014) DNA methylation dynamics of the human preimplantation embryo. Nature 511:611–615. https://doi.org/10.1038/nature13581
Sohni A et al (2015) Dynamic switching of active promoter and enhancer domains regulates Tet1 and Tet2 expression during cell state transitions between pluripotency and differentiation. Mol Cell Biol 35:1026–1042. https://doi.org/10.1128/mcb.01172-14
Somer RA, Thummel CS (2014) Epigenetic inheritance of metabolic state. Curr Opin Genet Dev 27:43–47. https://doi.org/10.1016/j.gde.2014.03.008
Soozangar N, Sadeghi MR, Jeddi F, Somi MH, Shirmohamadi M, Samadi N (2018) Comparison of genome-wide analysis techniques to DNA methylation analysis in human cancer. J Cell Physiol 233:3968–3981. https://doi.org/10.1002/jcp.26176
Sosnowski DW, Booth C, York TP, Amstadter AB, Kliewer W (2018) Maternal prenatal stress and infant DNA methylation: a systematic review. Dev Psychobiol 60:127–139. https://doi.org/10.1002/dev.21604
Stewart KR, Veselovska L, Kelsey G (2016) Establishment and functions of DNA methylation in the germline. Epigenomics 8:1399–1413. https://doi.org/10.2217/epi-2016-0056
Sun B, Shi Y, Yang X, Zhao T, Duan J, Sun Z (2018) DNA methylation: a critical epigenetic mechanism underlying the detrimental effects of airborne particulate matter. Ecotoxicol Environ Saf 161:173–183. https://doi.org/10.1016/j.ecoenv.2018.05.083
Sziraki A, Tyshkovskiy A, Gladyshev VN (2018) Global remodeling of the mouse DNA methylome during aging and in response to calorie restriction. Aging Cell 17(3):e12738. https://doi.org/10.1111/acel.12738
Tang B, Zhou Y, Wang CM, Huang TH, Jin VX (2017) Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns. Sci Rep 7:3626. https://doi.org/10.1038/s41598-017-03837-z
Thomas CD et al (2004) Extinction risk from climate change. Nature 427:145–148. https://doi.org/10.1038/nature02121
Tobi EW et al (2014) DNA methylation signatures link prenatal famine exposure to growth and metabolism. Nat Commun 5:5592. https://doi.org/10.1038/ncomms6592
Tobi EW et al (2018) DNA methylation as a mediator of the association between prenatal adversity and risk factors for metabolic disease in adulthood. Sci Adv 4:eaao4364. https://doi.org/10.1126/sciadv.aao4364
Trerotola M, Relli V, Simeone P, Alberti S (2015) Epigenetic inheritance and the missing heritability. Hum Genom 9(1):17. https://doi.org/10.1186/s40246-015-0041-3
Tserga A, Binder AM, Michels KB (2017) Impact of folic acid intake during pregnancy on genomic imprinting of IGF2/H19 and 1-carbon metabolism. FASEB J 31(12):5149–5158. https://doi.org/10.1096/fj.201601214RR
Unnikrishnan A, Freeman WM, Jackson J, Wren JD, Porter H, Richardson A (2019) The role of DNA methylation in epigenetics of aging. Pharmacol Ther 195:172–185. https://doi.org/10.1016/j.pharmthera.2018.11.001
Van Soom A, Peelman L, Holt WV, Fazeli A (2014) An introduction to epigenetics as the link between genotype and environment: a personal view. Reprod Domest Anim 3:2–10. https://doi.org/10.1111/rda.12341
Vassoler FM, Sadri-Vakili G (2014) Mechanisms of transgenerational inheritance of addictive-like behaviors. Neuroscience 264:198–206. https://doi.org/10.1016/j.neuroscience.2013.07.064
Vidal E et al (2017) A DNA methylation map of human cancer at single base-pair resolution. Oncogene 36:5648–5657. https://doi.org/10.1038/onc.2017.176
Vilgalys TP, Rogers J, Jolly CJ, Mukherjee S, Tung J (2019) Evolution of DNA Methylation in Papio Baboons. Mol Biol Evol 36:527–540. https://doi.org/10.1093/molbev/msy227
von Meyenn F et al (2016) Impairment of DNA methylation maintenance is the main cause of global demethylation in naive embryonic stem cells. Mol Cell 62:848–861. https://doi.org/10.1016/j.molcel.2016.04.025
Wang Z, Baulcombe DC (2020) Transposon age and non-CG methylation. Nat Commun 11:1221. https://doi.org/10.1038/s41467-020-14995-6
Wang Y, Liu H, Sun Z (2017) Lamarck rises from his grave: parental environment-induced epigenetic inheritance in model organisms and humans. Biol Rev Camb Philos Soc 92:2084–2111. https://doi.org/10.1111/brv.12322
Wang Z, Song J, Li Y, Dong B, Zou Z, Ma J (2019) Early-life exposure to the Chinese famine is associated with higher methylation level in the INSR gene in later adulthood. Sci Rep 9:3354. https://doi.org/10.1038/s41598-019-38596-6
Wang M et al (2020) Genome-wide DNA methylation analysis reveals significant impact of long-term ambient air pollution exposure on biological functions related to mitochondria and immune response. Environ Pollut 264:114707. https://doi.org/10.1016/j.envpol.2020.114707
Wei Y, Schatten H, Sun QY (2015) Environmental epigenetic inheritance through gametes and implications for human reproduction. Hum Reprod Update 21:194–208. https://doi.org/10.1093/humupd/dmu061
Wei JW, Huang K, Yang C, Kang CS (2017) Non-coding RNAs as regulators in epigenetics (Review). Oncol Rep 37:3–9. https://doi.org/10.3892/or.2016.5236
Weinberg DN et al (2019) The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape. Nature 573:281–286. https://doi.org/10.1038/s41586-019-1534-3
Wendte JM, Pikaard CS (2017) The RNAs of RNA-directed DNA methylation. Biochim Biophys Acta Gene Regul Mech 1860(1):140–148. https://doi.org/10.1016/j.bbagrm.2016.08.004
Weng X, Liu F, Zhang H, Kan M, Wang T, Dong M, Liu Y (2018) Genome-wide DNA methylation profiling in infants born to gestational diabetes mellitus. Diabetes Res Clin Pract 142:10–18. https://doi.org/10.1016/j.diabres.2018.03.016
Wielsøe M, Tarantini L, Bollati V, Long M, Bonefeld-Jørgensen EC (2020) DNA methylation level in blood and relations to breast cancer, risk factors and environmental exposure in Greenlandic Inuit women. Basic Clin Pharmacol Toxicol 127(4):338–350. https://doi.org/10.1111/bcpt.13424
Wikenius E, Moe V, Smith L, Heiervang ER, Berglund A (2019) DNA methylation changes in infants between 6 and 52 weeks. Sci Rep 9:17587. https://doi.org/10.1038/s41598-019-54355-z
Wilson LE, Xu Z, Harlid S, White AJ, Troester MA, Sandler DP, Taylor JA (2019) Alcohol and DNA methylation: an epigenome-wide association study in blood and normal breast tissue. Am J Epidemiol 188:1055–1065. https://doi.org/10.1093/aje/kwz032
Wu H, Zhang Y (2014) Reversing DNA methylation: mechanisms, genomics, and biological functions. Cell 156:45–68. https://doi.org/10.1016/j.cell.2013.12.019
Xie S, Jakoncic J, Qian C (2012) UHRF1 double tudor domain and the adjacent PHD finger act together to recognize K9me3-containing histone H3 tail. J Mol Biol 415:318–328. https://doi.org/10.1016/j.jmb.2011.11.012
Xie W et al (2013) Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell 153(5):1134–1148. https://doi.org/10.1016/j.cell.2013.04.022
Xie W et al (2018) DNA methylation patterns separate senescence from transformation potential and indicate cancer risk. Cancer Cell 33(309–321):e305. https://doi.org/10.1016/j.ccell.2018.01.008
Xu Q et al (2019) SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development. Nat Genet 51:844–856. https://doi.org/10.1038/s41588-019-0398-7
Xue W, Wu X, Wang F, Han P, Cui B (2018) Genome-wide methylation analysis identifies novel prognostic methylation markers in colon adenocarcinoma. Biomed Pharmacother 108:288–296. https://doi.org/10.1016/j.biopha.2018.09.043
Yagi M et al (2017) Derivation of ground-state female ES cells maintaining gamete-derived DNA methylation. Nature 548:224–227. https://doi.org/10.1038/nature23286
Yang X, Huang Y, Sun C, Li J (2017) Maternal prenatal folic acid supplementation programs offspring lipid metabolism by aberrant DNA methylation in hepatic ATGL and adipose LPL in rats. Nutrients 9(9):935. https://doi.org/10.3390/nu9090935
Young RA (2011) Control of the embryonic stem cell state. Cell 144:940–954. https://doi.org/10.1016/j.cell.2011.01.032
Zagkos L, Auley MM, Roberts J, Kavallaris NI (2019) Mathematical models of DNA methylation dynamics: implications for health and ageing. J Theor Biol 462:184–193. https://doi.org/10.1016/j.jtbi.2018.11.006
Zeng Y, Chen T (2019) DNA methylation reprogramming during mammalian. Genes (Basel) 10(4):257. https://doi.org/10.3390/genes10040257
Zhang T et al (2016a) G9a/GLP complex maintains imprinted DNA methylation in embryonic stem cells. Cell Rep 15:77–85. https://doi.org/10.1016/j.celrep.2016.03.007
Zhang Y, Elgizouli M, Schöttker B, Holleczek B, Nieters A, Brenner H (2016b) Smoking-associated DNA methylation markers predict lung cancer incidence. Clin Epigenet 8:127. https://doi.org/10.1186/s13148-016-0292-4
Zhang Y et al (2018a) Dynamic epigenomic landscapes during early lineage specification in mouse embryos. Nat Genet 50:96–105. https://doi.org/10.1038/s41588-017-0003-x
Zhang ZM et al (2018b) Structural basis for DNMT3A-mediated de novo DNA methylation. Nature 554:387–391. https://doi.org/10.1038/nature25477
Zhang M et al (2020) A risk score system based on DNA methylation levels and a nomogram survival model for lung squamous cell carcinoma. Int J Mol Med 46(1):252–264. https://doi.org/10.3892/ijmm.2020.4590
Zhao Q et al (2016) Dissecting the precise role of H3K9 methylation in crosstalk with DNA maintenance methylation in mammals. Nat Commun 7:12464. https://doi.org/10.1038/ncomms12464
Zhou H, Hu H, Lai M (2010) Non-coding RNAs and their epigenetic regulatory mechanisms. Biol Cell 102:645–655. https://doi.org/10.1042/bc20100029
Zhu B, Reinberg D (2011) Epigenetic inheritance: uncontested? Cell Res 21:435–441. https://doi.org/10.1038/cr.2011.26
Zhu J et al (2013) Genome-wide chromatin state transitions associated with developmental and environmental cues. Cell 152(3):642–654. https://doi.org/10.1016/j.cell.2012.12.033
Zhu H, Wang G, Qian J (2016) Transcription factors as readers and effectors of DNA methylation. Nat Rev Genet 17:551–565. https://doi.org/10.1038/nrg.2016.83
Zhu P et al (2018) Single-cell DNA methylome sequencing of human preimplantation embryos. Nat Genet 50:12–19. https://doi.org/10.1038/s41588-017-0007-6
Zou X, Ma W, Solov’yov IA, Chipot C, Schulten K (2012) Recognition of methylated DNA through methyl-CpG binding domain proteins. Nucleic Acids Res 40:2747–2758. https://doi.org/10.1093/nar/gkr1057
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This work was supported by the national natural science foundation of China (Nos. 31972529, 31001017, 31272464), and the national key research and development projects (2017YFD0500500, 2017YFD0502200).
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Li, Y., Xu, Y., Liu, T. et al. The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals. Mamm Genome 32, 135–152 (2021). https://doi.org/10.1007/s00335-021-09870-8
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DOI: https://doi.org/10.1007/s00335-021-09870-8