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Murine endogenous retroviruses and their transcriptional potentials

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References

  • L Benit P Dessen T Heidmann (2001) ArticleTitleIdentification, phylogeny, and evolution of retroviral elements based on their envelope genes J Virol 75 11709–11719 Occurrence Handle10.1128/JVI.75.23.11709-11719.2001 Occurrence Handle1:CAS:528:DC%2BD3MXotlaqs7Y%3D Occurrence Handle11689652

    Article  CAS  PubMed  Google Scholar 

  • K Cho LK Adamson DG Greenhalgh (2002) ArticleTitleInduction of murine AIDS virus-related sequences after burn injury J Surg Res 104 53–62 Occurrence Handle10.1006/jsre.2002.6410 Occurrence Handle1:CAS:528:DC%2BD38XjtVKksbk%3D Occurrence Handle11971678

    Article  CAS  PubMed  Google Scholar 

  • K Cho T Pham L Adamson D Greenhalgh (2003) ArticleTitleRegulation of murine endogenous retroviruses in the thymus after injury J Surg Res 115 318–324 Occurrence Handle10.1016/S0022-4804(03)00230-0 Occurrence Handle1:CAS:528:DC%2BD3sXhtVShs7jN Occurrence Handle14697300

    Article  CAS  PubMed  Google Scholar 

  • S Depil C Roche P Dussart L Prin (2002) ArticleTitleExpression of a human endogenous retrovirus, HERV-K, in the blood cells of leukemia patients Leukemia 16 254–259 Occurrence Handle10.1038/sj.leu.2402355 Occurrence Handle1:CAS:528:DC%2BD38XhvFGjurg%3D Occurrence Handle11840292

    Article  CAS  PubMed  Google Scholar 

  • BJ Deroo TK Archer (2001) ArticleTitleGlucocorticoid receptor-mediated chromatin remodeling in vivo Oncogene 20 3039–3046 Occurrence Handle10.1038/sj.onc.1204328 Occurrence Handle1:CAS:528:DC%2BD3MXks1Glur8%3D Occurrence Handle11420719

    Article  CAS  PubMed  Google Scholar 

  • CA Dunn P Medstrand DL Mager (2003) ArticleTitleAn endogenous retroviral long terminal repeat is the dominant promoter for human beta1,3-galactosyltransferase 5 in the colon Proc Natl Acad Sci USA 100 12841–12846 Occurrence Handle10.1073/pnas.2134464100 Occurrence Handle1:CAS:528:DC%2BD3sXoslKnur0%3D Occurrence Handle14534330

    Article  CAS  PubMed  Google Scholar 

  • WN Frankel JM Coffin (1994) ArticleTitleEndogenous nonecotropic proviruses mapped with oligonucleotide probes from the long terminal repeat region Mamm Genome 5 275–281 Occurrence Handle10.1007/BF00389541 Occurrence Handle1:CAS:528:DyaK2cXmslegur4%3D Occurrence Handle8075500

    Article  CAS  PubMed  Google Scholar 

  • WN Frankel JP Stoye BA Taylor JM Coffin (1989a) ArticleTitleGenetic analysis of endogenous xenotropic murine leukemia viruses: association with two common mouse mutations and the viral restriction locus Fv-1 J Virol 63 1763–1774 Occurrence Handle1:CAS:528:DyaL1MXhvVKqsbk%3D

    CAS  Google Scholar 

  • WN Frankel JP Stoye BA Taylor JM Coffin (1989b) ArticleTitleGenetic identification of endogenous polytropic proviruses by using recombinant inbred mice J Virol 63 3810–3821 Occurrence Handle1:CAS:528:DyaL1MXlsVOrs7o%3D

    CAS  Google Scholar 

  • WN Frankel JP Stoye BA Taylor JM Coffin (1990) ArticleTitleA linkage map of endogenous murine leukemia proviruses Genetics 124 221–236 Occurrence Handle1:CAS:528:DyaK3cXhtleltrc%3D Occurrence Handle2155154

    CAS  PubMed  Google Scholar 

  • EA Golemis NA Speck N Hopkins (1990) ArticleTitleAlignment of U3 region sequences of mammalian type C viruses: identification of highly conserved motifs and implications for enhancer design J Virol 64 534–542 Occurrence Handle1:CAS:528:DyaK3cXntFajuw%3D%3D Occurrence Handle2153223

    CAS  PubMed  Google Scholar 

  • S Hatada DJ Grant N Maeda (2003) ArticleTitleAn intronic endogenous retrovirus-like sequence attenuates human haptoglobin-related gene expression in an orientation-dependent manner Gene 319 55–63 Occurrence Handle10.1016/S0378-1119(03)00791-1 Occurrence Handle1:CAS:528:DC%2BD3sXosFyjt7o%3D Occurrence Handle14597171

    Article  CAS  PubMed  Google Scholar 

  • PB Hebbar TK Archer (2003) ArticleTitleNuclear factor 1 is required for both hormone-dependent chromatin remodeling and transcriptional activation of the mouse mammary tumor virus promoter Mol Cell Biol 23 887–898 Occurrence Handle10.1128/MCB.23.3.887-898.2003 Occurrence Handle1:CAS:528:DC%2BD3sXnvFGhug%3D%3D Occurrence Handle12529394

    Article  CAS  PubMed  Google Scholar 

  • DC Hughes (2001) ArticleTitleAlternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus J Mol Evol 53 77–79 Occurrence Handle1:CAS:528:DC%2BD3MXmt1Sjsbw%3D Occurrence Handle11479678

    CAS  PubMed  Google Scholar 

  • J Jeong LK Adamson R Hatam DG Greenhalgh K Cho (2003) ArticleTitleAlterations in the expression and modification of histones in the liver after injury Exp Mol Pathol 75 256–264 Occurrence Handle10.1016/S0014-4800(03)00095-9 Occurrence Handle1:CAS:528:DC%2BD3sXovVehtLw%3D Occurrence Handle14611817

    Article  CAS  PubMed  Google Scholar 

  • H Karlsson S Bachmann J Schroder J McArthur EF Torrey et al. (2001) ArticleTitleRetroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia Proc Natl Acad Sci USA 98 4634–4639 Occurrence Handle10.1073/pnas.061021998 Occurrence Handle1:CAS:528:DC%2BD3MXjtVagu7Y%3D Occurrence Handle11296294

    Article  CAS  PubMed  Google Scholar 

  • AM Krieg AD Steinberg (1990) ArticleTitleAnalysis of thymic endogenous retroviral expression in murine lupus. Genetic and immune studies J Clin Invest 86 809–816 Occurrence Handle1:CAS:528:DyaK3cXmtVGqsrY%3D Occurrence Handle2203823

    CAS  PubMed  Google Scholar 

  • S Kumar K Tamura IB Jakobsen M Nei (2001) ArticleTitleMEGA2: molecular evolutionary genetics analysis software Bioinformatics 17 1244–1245 Occurrence Handle10.1093/bioinformatics/17.12.1244 Occurrence Handle1:CAS:528:DC%2BD38XmtVCktQ%3D%3D Occurrence Handle11751241

    Article  CAS  PubMed  Google Scholar 

  • ES Lander LM Linton B Birren C Nusbaum MC Zody et al. (2001) ArticleTitleInitial sequencing and analysis of the human genome Nature 409 860–921 Occurrence Handle10.1038/35057062 Occurrence Handle11237011

    Article  PubMed  Google Scholar 

  • E Larsson G Andersson (1998) ArticleTitleBeneficial role of human endogenous retroviruses: facts and hypotheses Scand J Immunol 48 329–338 Occurrence Handle10.1046/j.1365-3083.1998.00428.x Occurrence Handle1:STN:280:DyaK1M%2FgsV2lsw%3D%3D Occurrence Handle9790301

    Article  CAS  PubMed  Google Scholar 

  • WJ Lee HJ Kwun KL Jang (2003) ArticleTitleAnalysis of transcriptional regulatory sequences in the human endogenous retrovirus W long terminal repeat J Gen Virol 84 2229–2235 Occurrence Handle10.1099/vir.0.19076-0 Occurrence Handle1:CAS:528:DC%2BD3sXlvF2gtrg%3D Occurrence Handle12867655

    Article  CAS  PubMed  Google Scholar 

  • R Lower (1999) ArticleTitleThe pathogenic potential of endogenous retroviruses: facts and fantasies Trends Microbiol 7 350–356 Occurrence Handle10.1016/S0966-842X(99)01565-6 Occurrence Handle1:STN:280:DyaK1MvgtV2rsg%3D%3D Occurrence Handle10470042

    Article  CAS  PubMed  Google Scholar 

  • J Majors (1990) ArticleTitleThe structure and function of retroviral long terminal repeats Curr Top Microbiol Immunol 157 49–92 Occurrence Handle1:CAS:528:DyaK3cXmt1Ghs7k%3D Occurrence Handle2203611

    CAS  PubMed  Google Scholar 

  • R Mantovani (1998) ArticleTitleA survey of 178 NF-Y binding CCAAT boxes Nucleic Acids Res 26 1135–1143 Occurrence Handle10.1093/nar/26.5.1135 Occurrence Handle1:CAS:528:DyaK1cXhvFarsL0%3D Occurrence Handle9469818

    Article  CAS  PubMed  Google Scholar 

  • WF Marzluff P Gongidi KR Woods J Jin LJ Maltais (2002) ArticleTitleThe human and mouse replication-dependent histone genes Genomics 80 487–498 Occurrence Handle10.1016/S0888-7543(02)96850-3 Occurrence Handle1:CAS:528:DC%2BD38XotVyqu7s%3D Occurrence Handle12408966

    Article  CAS  PubMed  Google Scholar 

  • MA McClure MS Johnson DF Feng RF Doolittle (1988) ArticleTitleSequence comparisons of retroviral proteins: relative rates of change and general phylogeny Proc Natl Acad Sci USA 85 2469–2473 Occurrence Handle1:CAS:528:DyaL1cXktValt7Y%3D Occurrence Handle2451824

    CAS  PubMed  Google Scholar 

  • PN Nelson PR Carnegie J Martin H Davari Ejtehadi P Hooley et al. (2003) ArticleTitleDemystified. Human endogenous retroviruses Mol Pathol 56 11–18 Occurrence Handle10.1136/mp.56.1.11 Occurrence Handle1:STN:280:DC%2BD3s%2FotFegtQ%3D%3D Occurrence Handle12560456

    Article  CAS  PubMed  Google Scholar 

  • KN Nikbakht CY Ou LR Boone PL Glover WK Yang (1985) ArticleTitleNucleotide sequence analysis of endogenous murine leukemia virus-related proviral clones reveals primer-binding sites for glutamine tRNA J Virol 54 889–893 Occurrence Handle1:CAS:528:DyaL2MXksVyrtbY%3D Occurrence Handle2987543

    CAS  PubMed  Google Scholar 

  • JL Portis (2002) ArticleTitlePerspectives on the role of endogenous human retroviruses in autoimmune diseases Virology 296 1–5 Occurrence Handle10.1006/viro.2002.1388 Occurrence Handle1:CAS:528:DC%2BD38XktVehurk%3D Occurrence Handle12036312

    Article  CAS  PubMed  Google Scholar 

  • U Schon W Seifarth C Baust C Hohenadl V Erfle et al. (2001) ArticleTitleCell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats Virology 279 280–291 Occurrence Handle10.1006/viro.2000.0712 Occurrence Handle1:CAS:528:DC%2BD3MXhs1ehtQ%3D%3D Occurrence Handle11145909

    Article  CAS  PubMed  Google Scholar 

  • JD Thompson DG Higgins TJ Gibson (1994) ArticleTitleCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673–4680 Occurrence Handle1:CAS:528:DyaK2MXitlSgu74%3D Occurrence Handle7984417

    CAS  PubMed  Google Scholar 

  • CN Ting MP Rosenberg CM Snow LC Samuelson MH Meisler (1992) ArticleTitleEndogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene Genes Dev 6 1457–1465 Occurrence Handle1:CAS:528:DyaK38XlsVCktr4%3D Occurrence Handle1379564

    CAS  PubMed  Google Scholar 

  • K Tomonaga JM Coffin (1999) ArticleTitleStructures of endogenous nonecotropic murine leukemia virus (MLV) long terminal repeats in wild mice: implication for evolution of MLVs J Virol 73 4327–4340 Occurrence Handle1:CAS:528:DyaK1MXis1ers7Y%3D Occurrence Handle10196331

    CAS  PubMed  Google Scholar 

  • T Tsukuba K Okamoto Y Yasuda W Morikawa H Nakanishi et al. (2000) ArticleTitleNew functional aspects of cathepsin D and cathepsin E Mol Cells 10 601–611 Occurrence Handle10.1007/s100590000019 Occurrence Handle1:CAS:528:DC%2BD3MXnslemuw%3D%3D Occurrence Handle11211863

    Article  CAS  PubMed  Google Scholar 

  • F Wang–Johanning AR Frost B Jian L Epp DW Lu et al. (2003) ArticleTitleQuantitation of HERV-K env gene expression and splicing in human breast cancer Oncogene 22 1528–1535 Occurrence Handle10.1038/sj.onc.1206241 Occurrence Handle1:CAS:528:DC%2BD3sXhvFShur4%3D Occurrence Handle12629516

    Article  CAS  PubMed  Google Scholar 

  • RH Waterson E Birney J Rogers JF Abril (1990) ArticleTitleInitial sequencing and comparative analysis of the mouse genome Nature 420 520–562

    Google Scholar 

  • Y Xiong TH Eickbush (1990) ArticleTitleOrigin and evolution of retroelements based upon their reverse transcriptase sequences EMBO J 9 3353–3362 Occurrence Handle1:CAS:528:DyaK3cXmt1Ghsbk%3D Occurrence Handle1698615

    CAS  PubMed  Google Scholar 

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Acknowledgment

This study was supported by the Shriners of North America (Grant No. 8560 and 8650). J.B. is supported by the Floyd and Mary Schwall Fellowship.

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Correspondence to Kiho Cho.

Additional information

The nucleotide sequence data reported in this paper have been submitted to GenBank and have been assigned the accession numbers: AY608536 (UA3), AY608537 (UA5), AY608538 (UA6), AY608539 (UA7), AY608540 (UA8), AY608541 (UA9), AY608542 (UA10), AY608543 (UA11), AY608544 (UA12), AY608545 (UA13), AY608546 (UA14), AY608547 (UA15), AY608548 (UA17), AY608549 (UA18), AY608550 (UA19), AY608551 (UA20), AY608552 (UA21), AY608553 (UA22), AY608554 (UA23), AY608555 (UA24), AY608556 (UA25), AY608557 (UA26), AY608558 (UA27), AY608559 (UA28), AY608560 (UA29), AY608560 (UA30), AY608562 (UA31), AY608563 (UA32), AY608564 (UA33), AY608565 (UA34), AY608566 (UA35), AY608567 (UA36), AY608568 (UA37), AY608569 (UA38), AY608570 (UA39), AY608571 (UA40), AY608572 (UA41), AY608573 (UA42), AY608574 (UA43), AY608575 (UA44).

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Boonyaratanakornkit, J., Chew, A., Ryu, D.D. et al. Murine endogenous retroviruses and their transcriptional potentials. Mamm Genome 15, 914–923 (2004). https://doi.org/10.1007/s00335-004-2409-x

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